RNA id: XM_034301514.1


Basic Information

Item Value
RNA id XM_034301514.1
length 4888
RNA type mRNA
GC content 0.39
exon number 6
gene id si:dkey-14o18.2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12072924 ~ 12084163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGAAGCTGAGATGAACTAGTCAGCTTGTGGCTCCATGGATTGACAACAGGAGTATACTGGTGGTGACACAGATTAACACGATCTGGAAATTGATTATCTGGATGCCAGACACAGGAGATCTAGTGTACCAAAGATTCAATCACTTtcatgtgggaaaaaataaaccaTGCCTACCTCTCCTCTATCATATTACAATACTGGATTGTGACACATGGACACATGGAACTCTGTCATGCTATTTTTGATGGATATATGACCTATCCAAGCACTTTTAACGAAAATAGCGACTGACTTCTAAACTGTCTTGAAATTTCCTGTGGACAAACACAGCATGTTGTAGTAGTTCAtctttttgtatgtttttgtgtatttgccaTTTCTCCATGACTTCTTTTCATACCACACTAATGATAAAGAAGCACAATGTTCACACATCAGCTggataaatacataataaaaactgGATAAAGGATAAAGACTGTACTTAATAATGGCTAAGGACACAAATATAGCCATTTGGCCTTTTCCATTGGTATTCTCAGACAATGGGCAAAGGGGTCGAATGTTTCGGGGACTTTGTTCTCTGCCTCTTCCACTCTATTCACTTCTTATCCTTTCAGTACTATCCTCAGTGGGACTTAGCAATGTACCAGGAGTAGAATATGATTGGGGAGCTCACCCCAAGTTAGTTTGCATGCCTCTACCTGCAGACACTGATCCAAGTTGTTTTCCCCCAGATGGGGTTACTCATGGACCTATTATTAATGGACATAACAATGGTCATGGCAATAGCCACAGTAACGGACATGGGAAGGGACATTTTGTTGGAGGCTTGCCTAACAGTCCTACCGGCAGCAGTAGTCGACGGGGCATATCTGATGAAGCAAAAGCTACAATTCTGCACTTGAGGGAAAGCCTAGTGCGTCAGAAGGAGACCATTCTGGATCAGAGGGAAACTATACGGGAGTTGACTGCAAAACTGACACTCTGTGAGGGCTTTGGGAGGGGTGCAAGTGGGCACCACAATGAAGACAACCATGGACATCATGGCTCTCACCACTCTTCACATCACTATGACAGTGACCGTCATTCTGATCCCCACTATCCTCTCAATGGGTACCACAATGACCATCACAGAGTAAAGCCACCATTTATGGGGAAACATGGATTTTCCCCTGAGCAGGCAGGGAAGACCTTGCAGGCTCtgaaagagaggctggagaaTTTACAGGCAAGGAATTCGTCTAGTACCTATTCAAGTTCACTGAAAGACCTTCTGCAGCGCAAAATTAATGCACTTGAAGAACAGCTCCACCGTCACCATGACAGTGACCATGACTATGGCACCCACGAATCCCACCCTGGGCATGGCCACCGTGATAATCACCATGATGACCACAGTGGAGATCACCATGATGACCATGATAACAACCGCCACTATGGTCATCATTACAGTCACTATTATGGCCATCATCAACTCAGCACACATGACAATGATAATGATAATCACCATGATGATCATCATAACAATCATAATGATGACCATCATGATGACCACCATGACAGCCACCAGAATGAACACCATGATGACCATCATTTTGACCCCCATGACAGTGATCACCACAGCAGCAATGATCATGGCCACCAGCGCCATAGCTCTCTTAAGCCAATAGCATCTAGAGCACGTGGTGCCTACAATAAGTTGGATTCTGTGCTGAGCCATCTGTATCACAGGCCCCCAGAAACAGaaaaccacAAGAGACCTAAAAATCCTGATGGCTTTCAAATTGGATTCCCCATGCACACTAACTACATGTATGGCCGGATCAAGCGCACTCTTCTCAATGAAATCTTTGCCCTAACTGTCTGCCTCTGGCTAAAGGGGGGTTCAGGCTCAGGGATAGGCACCCCTTTCTCTTACTCTGTTCCTGGCCAGGCTAATGAGCTTGTCTTGATTGAATGGGCCAACAGTCCAATAGAATTACTGGTGAATGACAAAGCTGTAACGCTACCCCTATCTCTGCAAGACAGAAAGTGGCACCATCTTTGTGTGACTTGGTCGACTCGAGATGGTGTATGGGAGGCCTATCAGAATGGAGTGAAAAGGGGTTCTGGGGAAAATCTATCCCCCTGGCATCCAATAAAACCAGGAGGAGTCTTTATACTGGGACAGGAGCAGGATACTCTTGGGGGCCGCTTTGATGCCACACAATCATTTGTTGGAGAAATGTCAGACCTACAGGTATGGTCACGTGTTCTTAACTCTCAAGAGATAGACAACCAAGCCTCCTGTTCCAGCCACCTCACTGGAGATGTTATCGCCTGGAGTGAGTCCATTGTGGAACTTCATGGAGGGGTTACCAAATATCCCTTTGACCCTTGTCACTAAAGGCCCAAGTGGGTTGCTGCTACTGCTTCTTAACCCTTAGAACCCCATGAACATAATTTGCAGGAATTTTCATAGGTATCTTGATGTCATAAATAAGAATCATTTATCATTTGGGAATAAGGCACACATTTTTTAGAAGCAGAAAGACTCTTTCCAAGCATCCTGGTTATGAAATACAGTATCAGTGAGGAATCTGTTTttgaaaatacatacatacatacatgttcAGCATTGTGTTCAAACTGCACATATTATCTCACAGTTTTTCCTCTTCAGATTAGAGAGAAAGCAAAGTTATTGTTTTTCAGAGATGTGGTCTTGACCTCACATCCATGCTTTCTAAGTGTCTTTAAAACTTGTCaaaatatctggaaaaaaagGGGTTCATTCTTTTAGCTCTAAAAATATATGTTACTTACactatcattatttatttccagCATTTTGtaaattctttgtttttgttctcaAAGGTTAAAAGGTCAATCTGCCATGTCAATCAAAATGAAGTCAGATGATGATGCATGCACACTAGCTCTATAAAGACCAGTTTTAAATtgcataaaaacacagaagactATAGTTGGACACCTGCTGGAGAGACATGTATAGCAATCAAGAAGacataagtaaataaaagaagTACATGAAGTATACTTAACTATACTCAAATGTATTTTTCAGTTTCAACAAACAGTATGATACTAAATTCCCATgtcattcagaaataaataaataaataaataaataaaaagatcagATCTCTGGATGAAACCAAGAGGAGACAATATCAACGAAAAATGTTTCAGTCTTACACTAATCATATATTATTTCACCATACCAAGCCATAGAGTGTTCTATCATCAAAGTTCATGTGTTCTTATAGAGTACAACAATTAgtttccagtccactaattttgATTGGATAAGTAGCATTATTTAGTATAACAAcactggtacatttcactgtttgtattaCTCTGTCTGTGTTCGATATAAAATTtgaattctagcaatagttcattACATTGACACTGTTACTACACTTCctatgggctgtcagtcagtctgtgcatGACAACACACAACGCTccatccagctgtggcttctctGGCAATTATTTTTGTTGACGGAACAAAAGTAAACTAAATATTTGGCCAtaatgtgtctgaaatgtcagttactcaatattcaTTTCTTGTCTATAGACCTAgaaaaagcaatattgcacaatATGCTTGTTCAGTATTGCTTAACTAGACCACAGTGACCTATTATTACCATCTGTACTGAAATAACTTTTTGATGTACATACAAAAAAGGTACTAATTTCAAGAAAagtaaaatagattttattgaTAACAATGGTAATAACAAAAATCGTTATGTCAGATCCACGTCAAATAATAGCACATCTGTGTAGCCAAGGATGTTTTGAAAAGAAATTGTAGTGTGTCTGAATGTCTGTAGTGATTGCAATGTTAGAGGCCTAGTTAAAGGACGtgaaaaatgcttaaaaacagTCTAGGGTTCTAAGGGTTAAGCAATAACcatacaaaattaaaacatgctgttaaatATTATCCCTGCGGTTCATTTGTTATGACAAAGGAAATTTGAAAgcaacaagacaatgaccaTTTGGATGATTGAATAAATGTTAGTAAGTGTCAAGGGAAGaaattttaaatgctttattagATCCTGAAGCAGCTCTTAGCAGCATAGCACAGTGAGAAAGATTTGGGgcctatttaaatgtattcaagtgtttcatacaaaaaataaacaacaaaaacctttattttgtcctgtaaataaattataatccaAGGTGCTCTTTTAGTCTGCTTCTCTCTTCAGGTTCAGGTGTAACTGCAGGGAAAAgcttagttttagttttttcaTACTTATGTAACATGCATCTGATCAGTTTTTCAACTAGTAATGTTTATGCATATATGTATGCGTGGCATGTGTTGATACTGTGTAATGTGGATAAACGTGAAactatttgtattttttcataCAAATGTTACATCTATATTTCATACCAATTTGCATTTGAATACTACAGGTAGGTGGGGGGTTGAAATGGCTCTGCATATGTACATGCAGCAAGCCAGGAGCTGCATGAGAATGCAGAGGTGTCCATGGCAACATAGCTTAAAGAAGGATTAAACAGACAAAGAGAACACTCTGATGTAGGCCTATTCTCTTAGAATGCAGAACATGCAATCTTCCtggcactctctctctctctctctctctctctctctctcacttcctcattcACACAAATACAGTGGTTGGTGAACAACTCTATATTGAGAGAACACATACTGTACCATGGAAAACCATCTAAATAGCTTTTGGTTTCTGTATAATACTGTTGTATTTTTATGAAACATGAATTTATTCTATTTATGCAAATGCTTTAGTAAATtatgttttgtaaaatgttgcagaaatgaaaaaatgccCAATGTACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479624 lncRNA downstream 72414 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 75454 11997070 ~ 11997470 (-) True G404241
TU479616 lncRNA downstream 101960 11970742 ~ 11970964 (-) True G404235
TU479573 lncRNA downstream 251498 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 282759 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479664 lncRNA upstream 41294 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 61920 12146083 ~ 12147663 (-) False grin2da
TU479803 lncRNA upstream 191105 12275268 ~ 12275502 (-) True G404421
TU480108 lncRNA upstream 430308 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 452184 12536347 ~ 12553725 (-) False fam131ba
XM_026928212.2 mRNA downstream 13529 12028221 ~ 12059395 (-) True slc2a3a
XM_026928346.2 mRNA downstream 68444 12001016 ~ 12004480 (-) True LOC113535156
XM_034301698.1 mRNA downstream 68480 12001016 ~ 12004444 (-) False LOC113535156
XM_034301735.1 mRNA downstream 76932 11983194 ~ 11995992 (-) True usf2
XM_034301695.1 mRNA downstream 134503 11911671 ~ 11938421 (-) False ago3b
XM_026928300.2 mRNA upstream 23735 12107898 ~ 12119870 (-) True cacng8a
XM_034301703.1 mRNA upstream 61435 12145598 ~ 12256371 (-) False grin2da
XM_034301704.1 mRNA upstream 61435 12145598 ~ 12256371 (-) True grin2da
XM_034301705.1 mRNA upstream 64696 12148859 ~ 12256372 (-) False grin2da
XM_026928333.2 mRNA upstream 207579 12291742 ~ 12307057 (-) True dbpa
trnay-gua_21 other downstream 248961 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 250460 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 251960 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 253453 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 254950 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 346832 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 486301 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 487430 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 489436 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 490577 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile