RNA id: XM_034301526.1


Basic Information

Item Value
RNA id XM_034301526.1
length 2229
RNA type mRNA
GC content 0.52
exon number 17
gene id rangap1a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3927253 ~ 3937638 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCTTTCAAACGCCATGACGTCATCCGAATGAGCGGGACGCCTCCgctggtgtgtgaatgtgtgcatgttgtTTTTCATTCCCACCCATTAAACCGGATTAAAAGTGTTCTGCAGgtgtagggATGGCGTCGGACGTGGTGGCCCAGCTGGCCGACTCTCTGGCCCGGACGCAGGTGGGAGAGGGAGAGCTGAGCTATAAGGGACAGGGCCTGAAGCTGGACAACGCTGAATCTGtggaggAGATAGTGAAGGCGATTCGGTTTGAGGGTTTACGCGCTCTGCGTTTGGAGGGAAACACATTCGGAGTGGAGGCAGCACAAGCCATCGCTAAGGCACTGGAGGACAAGCGAGATTTTCAGtgctGTTACTGGAGTGATATGTTCACGGGCCGCCTGCGTTCAGAGATCCCTCCTGCTCTGaCATCTCTGGGTGCAGCTCTAATATCCGCCGGCGCTCAGTTAAAGGTGCTGGATCTGAGCGATAACGCGTTCGGACCCGATGGCGTGAAAGGCATCGAGACGCTGCTGAAGAGCTCAGCGTGTCACACACTGCAAGAGCTGCGCCTTAACAACTGCGGGATGGGCATCGGGGGAGGAAAGATCCTGGCAGCGGCCCTGACACACTGCCATAAAGAGTCGAGTAAGCTCGGCGCCCCTCTGAGGCTGAAGATCTTCATCGCAGGACGGAACAGACTGGAGAACGACGGAGCCACGGCGCTGGCTCAGGCCTTTCAGTTGATCGGCAGTCTGGAGGAAGTCCACATGCCTCAGAACGGCATCAACCACCCCGGAGTGACGGCTCTGGCCAACGCCGTGCAGCACAACCCCCAGCTCCGAGTGCTCAACCTCAACGACAACACTTTCACCAAGAAAGGAGCCATCGCCATGGCGCAGgctctGAAGCACCTCCGCAGTGTGCAGGTGATAAACTTCGGTGACTGTTTGGTTCGCTCTGAGGGAGCCTTCGCTATTGCCGAGACTCTGAAAGATGGCCTTCCCATTCTCAAGGAGCTGAACCTGTCGTTTGGGGAGATCACAGGAGAGGCTGCTCTGGCTGTTGCAAAAGCAGTAAAGCACAAAGACCAGCTAGAGAAACTCGACCTCAATGgtaacTGTATTGGTGAGGAAGGGTGTGAGAACCTCCGGGAGCTCATGCAGAGCATGAACATGGACAACCTCCTGGCCTCTCTGAGTGATGACGAAGGAGAGCcagatgatgacgatgatgatgatggcgaagatgatgaagaggaggaggaggaggatgatgatgatgatgaggaggaggaggaagagaagggggaggatgaggaagaagatgatgaagatgatgatgaagaggaggaaaatGAGGAAGAGGGGGAAGATGAGCCCAGTGCAACCGAACAGaTATCGACTCCACCTTCAGCCCCTCGCCCTCCAGACGTCTCGTCCTTCCTCTGTTTCCCGTCTCCAGAGAAACTGCTGCGCCTCGGAGACCAGAGAGTCCAACTGATCCAGAAACAGgTGGATGTGACAGACGTGAGTAAGACTGTAGAGGCTTTTCTGAAGATCTCGTCTGTGTATAAGGAAGAGGATCTTGAGGTGAAAGCAGCGGTGTTGGACAGTGTTGATGCTGTTTTGAGTAAAGCCTTTTCCACGCCATCAGTCCAGACATTTAGTTTCATCTCTGCGTTACTGGTGATGCTTGGTcttttaaagagtgaGGATAAATTAAAACCCGTGGCAGTCGTACCAGGTCACCTGCAGTGTTTGGAGCATGCAGTGAAGCAGAAGTATTTTCCCAGAGAGCACATCGCTGTGCTGCAAGCTTTTTTGgccagACAAAACAAGTCCTTGGACTCATGCATCAGTGCTCGAGACAGCCTTCGTGCCACACTGCAGAGACTACTGCCCGAGAgctaaagacacacacacacacacacacacacacacacacacacacacacactgtggatgTTTCTCTGCTCCTGGCTGCTCATCTTTGTGTGTTGGACGATTAAAAGGACATTGTTTGGCAGCACCCCCTGCAGGACGATACAGGACTCATGGactaaagacagacagatggaaacacacacacacacacacacacacacacacacacacacactctcttcagTCCATCTCACACTCTGCCAtgcttcatttaattaattcagcTCAGCATGATCAATAAAACCGgtctatataaaaatacatcaaaaaataaaaactgctctTGTGA

Function

GO: NA

KEGG:

id description
K14319 RANGAP1; Ran GTPase-activating protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474524 lncRNA downstream 9138 3916468 ~ 3918115 (-) True G399913
TU474550 lncRNA downstream 15906 3910640 ~ 3911347 (-) True G399935
TU474515 lncRNA downstream 19442 3881393 ~ 3907811 (-) True G399910
TU474514 lncRNA downstream 19442 3894725 ~ 3907811 (-) False G399910
TU474511 lncRNA downstream 19442 3901196 ~ 3907811 (-) False G399910
TU474566 lncRNA upstream 71429 4009067 ~ 4066280 (-) True G399950
TU474609 lncRNA upstream 162459 4100097 ~ 4106327 (-) True G399990
TU474649 lncRNA upstream 215400 4153038 ~ 4154893 (-) False LOC113534684
TU474749 lncRNA upstream 253103 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 296765 4234403 ~ 4293157 (-) False G400112
XM_026927753.2 mRNA downstream 101749 3822746 ~ 3825504 (-) True LOC113534792
XM_026927404.2 mRNA downstream 117904 3794859 ~ 3809349 (-) False si:ch211-106h11.3
XM_026927403.2 mRNA downstream 117904 3794859 ~ 3809349 (-) True si:ch211-106h11.3
XM_026927512.2 mRNA downstream 173133 3747482 ~ 3754120 (-) True LOC113534607
XM_034301665.1 mRNA downstream 326765 3585274 ~ 3600488 (-) True ubn2b
XM_026927370.2 mRNA upstream 55587 3993225 ~ 3999563 (-) True LOC113534507
XM_026927361.2 mRNA upstream 105407 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA upstream 105407 4043045 ~ 4059478 (-) True LOC113534503
XM_034301488.1 mRNA upstream 169238 4106876 ~ 4117916 (-) False LOC113534511
XM_034301487.1 mRNA upstream 169238 4106876 ~ 4117916 (-) False LOC113534511
XR_003403536.1 other downstream 565427 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 566299 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 615821 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 651298 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 186611 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1023464 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1649760 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2235350 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2434012 6371650 ~ 6374490 (-) False polr1h

Expression Profile