RNA id: XM_034301535.1


Basic Information

Item Value
RNA id XM_034301535.1
length 3557
RNA type mRNA
GC content 0.45
exon number 14
gene id sept7a
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4961102 ~ 5008464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCGTTGACGTAGAGCGACTGTACGCCACGCTGTTTGCGTAGGTTCGCGGTGGGGAATTGAGGAGTTGCCGTGAGTTGGAATGTCGGTGTGAGAGACTCGGTTACTGAGGCGACTCGGGGACGTCAAAATAATAATGGTAGCACAACAGAAGAACCTGGAAGGCTATGTGGGCTTCGCAAACCTCCCCAACCAAGTCTACAGAAAGTCCGTGAAGAGGGGCTTTGAGTTCACGCTAATGGTCGTGGGAGAATCAGGCCTGGGGAAGTCGACGCTCATCAACTCGCTGTTCCTCACAGATCTGTACTCTGCAGAGTATCCTGGACCTTCTCACAGAATCAAGAAGACTGTACAGGTGGAACAGTCCAAGGTGCTGGTAAAAGAGGGGGGAGTGCAGCTGCTGCTCACCATCGTGGACACACCGGGATTCGGAGATGCCGTAGACAACAGCAACTGCTGGCAGCCGGTGACCGATCACATCGACAGTAAGTTTGAGGATTACCTCAACGCAGAGTCGCGTGTCAACAGACGGCAGATGCCTGATAATAGAGTGCACTGCTGCTTGTACTTCATCGCCCCCTCTGGACACGGACTGAAGCCACTGGACATCGAGTTCATGAAGCGGTTACATGAAAAAGTGAACATCATCCCGCTCATCGCCAAAGCCGACACACTGACTCCAGAGGAGTGCCAGCAGTTCAAGAAGCAGATAATGCGAGAAATCCAGGAGCACAAAATCAAAATCTACGAGTTTCCCGAAACGGACGACGAAGAGGAGAACAAGCTAGTGAAGAAGATTAAGGATCGGCTGCCGCTGGCCGTCGTCGGCAGTAACACCATCATCGAGGTGAACGGGAAGCGCGTGAGAGGGAGGCAGTACCCGTGGGGTGTGGCTGAAGTTGAGAACGGAGAGCACTGTGACTTCACGATCTTACGAAACATGCTTATCAGAACCCACATGCAGGACCTGAAGGACGTGACTAATAACGTTCACTATGAGAACTACCGCAGCAGGAAGCTCGCTGCCGTCACCTACAACGGAGCGGACAACAACAAGAGCAAAGGCCAGCTCacaaaGAGTCCACTGGCgcagatggaggaggagaggagagagcacGTGGCTAAGATGAagaagatggagatggagatggagcaggtgtttgagatgaAGGTGAAGGAGAAGCTCCAGAAGCTGAAAGACTCTGAGACGGAGCTGCAGCGGCGTCATGAGCAGATGAAGAAGAACCTGGAGGCTCAGCATAAAGAGctggaggagaagaggaggcaGTTTGAGGAGGAGAAGGCCAGCTGGGAGGTGCAGCAACGTCTGGTGGAGCAGCAGAAGCTCGATGCCTCTagGACTTtggagaaaaacaagaagaagaagatcttTTAAAGTGTTTCAACCACCACGATGTACCAATTGCCAACAATGCCAGCCTGAACTGTCTGTCGGTCAAGCATAACGAAATATCCccaccctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgaaaggACAGCTTCAAGTTTACAGAAGCAAGAGAGGAGGAGGGCATCCTCTTCAAGTCCTGCACTTTTCCTCAGTTTTACTCGCCCTTACCTTATTTTGATCCTCTTGACCTCCATCTGCATAAGAATTGccgcaaagtgtgtgtgtgtgtgtgtgtgtgtctcacacgGTCACCGTCCAGCAGCGGATACACACAGCCGCCATGATAATTAGTGAAGAAATCTCTGTGTCAGGGCTGAGCAGTATGACGTCTATAAATCACAAGACATGAAGGCTTTTTTTAtaacacacagtatatacagcagGTCTATGAACAAAGTGCAGAAAAAGTTCACATTTAAATCctattcttaaaaataaaactacacttACAGTGATAGTTAGAAAAATtacaaggaaaagaaagaaaaataaagcaactGGTCAAATAAtagttttgtttgttgtgtttgttgtaaGTCAGTGTTATAAAAACAGTGATACCCTCGATACTCTCAGAAAAGCGTATCGTGAGGGATTACATGACGTCATCGTCattatatcgtcatattgcccagcccttcTCCACGTCCTATTCCTCCATCCCCTcgtttttctttcctctctgtaCCGATGTGCAGTCCAGAGAGCCGCTCTCTTTTCCCTCAGACACGCCGACAGACTCAAATTCGAAATGACCGAAAGGCTGCAGTACACCTCAggccatttattcattttgttaatttttttaaaaataaaaaacaatttaaaaaaatgtggctttaatttttttttttcttctttctctctaagAAATGTTAAGCTCTtccattttgtgtaatttaagTTATCTAGCCTCGGACCGCAttgtataactttttttttgttgttgttgtttgtgtaacatttcatttacttttgttttggtCTGTTTATTACGTGTTCTTATATATTCACCCTGCTACAGTGCTTTACGGAGATGCTGCGTTAATTTACCTTGATCAGCATCTCATAATCTGGACCTGGAGCTTGCGTTTGAATCCTCATGGACACATTTACACCCTGCATTAACGTACATCGCGTATCCGTTAGGGTCGGTTCAGGGTCATGGTGTATGATCGGACCGGTACCTCACTGGTGACCTTTTAAAAACTTCAAAGAGGTTCTGTGGACAGATGAGATCAACAATGGTAATGGACAACACTATATTTGGAGGCAAAATAGGCACTGCACACCAACGCATCATTccagctgtgaagcatggtggtgggtgTATCACTTGCTTCACATTGCTTCACCTTTTCAAAATTAGCTTTGTtagcataataaaaataatgatgatgatggatctTGTAGAGGAGAACTTTCTCCTGTGCTCACACCTGCCTCAGATCTGATCTCATCCCGGTCGCAATACATGCTGaccctgtttgtttgtttgtttgtttgtttttaaagtggTTAAATGCTGTCTGATGATAACCGAATCATTGAAACACGTTAACGCATGGTGTAAATGTGCCTGTGCTGGTGTGATGCTGTATAAGACCTGTTCTTGAAAAGTTAGGTTTAAGTGGAATTAAGCAGAACTGCTCATACATCTGAATACAGTTGTGCGTCACTTTTGGATAACATTAATGAGCACGCTGCAGCCGTATGACGATTTTATTCCCCACAGCTTCTCCTTTTCTCTAGTGAGTTATCTGGTAGTGAGCTGTTAGTGCAAGGCCTCAGTCACAAAGCACGGTTACTCTGAAGGCTTTTGTAGAACAGCTACAACCCTGCAAGCCAATTTAACAGCGCACCATACCCCCAAAATATCTCTTTGGTATGATCCAGATTGGCGCTCGCTGCTTATTGGCTGATTGGAGCAATGAGTGTGAGCTCCCACCCACAGCTGGCCGTTCTCTCACCCAGAATTATTAGCTTTCCTTTATGTAATGcacctatatattttttaaaaatttgttctctttttttccatttttattgtaCAAAGTCACATAATAAAACTGTGATGATGAACTTAACAGTG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0031105 septin complex cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475264 lncRNA downstream 42219 4911350 ~ 4918883 (-) False G400500
TU475265 lncRNA downstream 42219 4911350 ~ 4918883 (-) True G400500
TU475268 lncRNA downstream 77099 4881706 ~ 4884003 (-) True G400503
TU475255 lncRNA downstream 127119 4833754 ~ 4833983 (-) True G400494
XR_003404450.2 lncRNA downstream 143807 4813444 ~ 4817295 (-) False LOC113543895
TU475282 lncRNA upstream 3726 5012187 ~ 5012795 (-) True G400517
TU475266 lncRNA upstream 22398 5030859 ~ 5035922 (-) True G400501
TU475347 lncRNA upstream 119774 5128235 ~ 5136641 (-) False LOC113543870
XR_003404451.2 lncRNA upstream 231638 5240099 ~ 5242052 (-) True LOC113543905
TU475417 lncRNA upstream 270442 5278903 ~ 5279314 (-) True G400622
XM_026942235.2 mRNA downstream 6856 4928478 ~ 4954246 (-) True eepd1
XM_026942109.2 mRNA downstream 50125 4908526 ~ 4910977 (-) True snapin
XM_034301766.1 mRNA downstream 55707 4884598 ~ 4905395 (-) True si:dkey-222b8.1
XM_026942104.2 mRNA downstream 83458 4857220 ~ 4877644 (-) True syt11a
XM_026942249.2 mRNA downstream 110534 4840903 ~ 4850568 (-) True rit1
XM_034301437.1 mRNA upstream 31825 5040286 ~ 5052042 (-) False eya3
XM_026942137.2 mRNA upstream 31825 5040286 ~ 5052042 (-) False eya3
XM_034301438.1 mRNA upstream 31825 5040286 ~ 5052042 (-) False eya3
XM_026942136.2 mRNA upstream 31825 5040286 ~ 5052042 (-) True eya3
XM_034301804.1 mRNA upstream 45304 5053765 ~ 5059583 (-) True si:ch211-195b13.1
XR_003403516.2 other downstream 828180 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1599276 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1600148 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1649670 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1685147 3273840 ~ 3275955 (-) False G399489
TU475643 other upstream 578937 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1164527 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1363189 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1427526 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 2252879 7261340 ~ 7276644 (-) False fndc5b

Expression Profile