RNA id: XM_034301539.1


Basic Information

Item Value
RNA id XM_034301539.1
length 6487
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC113525084
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 328861 ~ 339349 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAACATTACTATTCCTCTGGCTCTGAGGAAAGGAGTAACAGCaggacactcacacactgtcagACAGTTCAAGTAGTTTAAACTTAGAAACCAAAGTTCACCTGCTGCCTTAAAAACCAGGAATGAAGTGAAAGCGTAACACTGCTGAGGAGACACACCCAGCCCGTGACTGAGAACCTCTCTGACACAGAAGAAATCCGCAGATAATGGCggcacaaagaaaaacacactaaCATCCCAAGCTGGAATAAACAGTCTCACGACATCCAGACATTCCCAAGCTGATGAGCGTAGAGACGATACCAAGCAGcggacagaaacagaaataaagaagagCGTTGCTGTTAGTTATCCAGAAATGTACAGAGTAGCTCCTGAACACAGCCAAGCTGATGGTAGTTCAGAAAATATTAACACAGCTACTGAAGCATCTCAAACATCTGAACCATCACAAGAAGATGGTATTGAAGAAATGCCCAGAGGGGGATCTGATTGCTCCAGTttcactgctgtgctgtttgGAAACACCTCTGCAGTCCACTTTGGAGATGAAAATATACTACTTGGAGCAGAACATGTTCCTCTAGATCAGGCCCACATCTccagaaaaataaaagtgtcaggATGTGCATTGTCAGTGGTCAACATACTGGACTTACATGAAGGTGATCTGTACTTGGACCATGTGGACCACATCACTGGTCAGTTAGTTAATGAAAACAACATCCAGTCCTTCATCTTTGTCCTGAAACTGGGACAATTTACAGATGATGATAAAATGGGACTTGAATGGCTGGAAAGAAAATTTGGAGAACATGCTCTTTCCTTTGTGATGATTCTGTTCACTTAcgagagagaggaggagtgtGACACCATCATAGATGACCTGAAGAACAACACTGTTCTAGAGCAACTGATGAAGAAGTGTGGAGGCAGATACTGCACATGCAGCAAGAGCATGAacaaccaatcagaaatgagaacaCTGCTGGAGAAGATTGATGATCTCTTCTCTCAGAACAATCAGCGCTGCTACACTGCTGAGAACTACAACACAGAATTAAAGTTTAAAGAACACCAGCAAGGCACGGGGAGGCAGAAAGATGACCGTAAGGTTCAACTACCAGGTGAGGATGAAGAATCTTTTGGCACCAAAAAGGATGTAGATGAACACAGAAAGGGACAAGCAGCAGAATCTGAAGATAATCAGTCAAGAGAtggacaaaaccaaaacaagaaAGAAGATAATCttagaaatgaaaacataagACAGCTTTTCAGCAGACTCAATCTTGATACCCAACATACACTGAAGACCAGTGAATTTCTCAAAATAACAGCATCCTCGTTGAAATGTCATGAACCGTGTGATGAAAAGGATTTAGTTCACACTTACCTATACGGGCTGATCATGATGGACTACAACGCAAGATATATCCCACTTAAACAACAAGTCACTAAAACCAACATTCAATCCAAAGCCAAAAAATCTACAGATATATTCGCTGTCCTCtttgacagtgagacagtgGGTAGTGGGGCAGTAGAGCAGCTCCAGATTCACCCAATGGATATTCAGATGGCTGCTTTTCACAGTGCAGACAACTTTCTTCGACAGTTAATGGTAACAAAGCTCTCACAATGTCAGTATGCTGTACCTCTGCTTGTGCCCAGCCCCACCACAGGGGAAATTGAATTTCCACTGTGGACTTTTcggcaaattaaaaaaagttggaAGTCAAAAGATGAGACAGGTAATACAACAAGCAAATGCAAATCAATAGTTGGAGTAGAAACTCCAATGGTGGCCTTCTTCAGATTGGGATCCGTGTCCTCATCCAAGTCACAGCTGATGAATAACTTAATCAATGATCGATATCATACATTTTTCGACAGGAACTGCCCCCAGGACAGCAAAACCAGACTTCTGATGAATGGAGTTGTTGAAATTGCCTGGTATTGCCCATCTGGTAAGACTTCTGATTGGCTTACTGACTGTGTTGCCTTCTGTAATTTTCATGGTGATGCAGGAACCAATACCATCCAGTGTGAGATTGTGACAAAAATGTCCACAGTAAATGTTGTCCTTATATCTACACATGGTAAGGATGAAAATAATAGGACAATAATTGAGGAGCTCTTAAAATCCACAAAGCCTCTCATTTTCCTTCTTACTGACAGTGACTCAGTTGCAGAGGAACTGGTGGAAGGGAAATACAGAATTGGTTTGAAAGATAGAAGTCAATCTGATGTGGCTGAGGAATTAAGAAGAACAATCAaagaatgcataaaatcatctACTTTTAAACTTGAGAATGTTGCCAAACAGCCAAATATAGTTGTGGATGAAGAGAAAGGAGAATGCCAAAGAGCCAAGAAAGCAGCAAACCAGCTCATGAGCCTGTTTAGCAATGAGACTCTGCCAAAGATCAAAGAAAAATACTTGCCCTGTCAAGGAAAACTGTGGCATGACTGGtgtcaagagaaaaaaaaactctaccGCTTAATGGGACACCTAGAAAACCACAAAATGTCtataaaacaggaaatgaataaaatacgCAGTCAGCAGCATAAATTGAATTTCAGCTGTCTTATAAAACTTTTTCTTGAGAGGCTAAATGCATtaacagaaaatgaaagagtctattttctgaagtgggTTGGAATGCTACTGGACAGTTGCACTTCAGATTGTCTATCCTCACTTCATCATGAATATGATGAACAATGGTCCAGGGTGTTGGatttgaagaaaaaacacaatatgTCACCATCACTCAGTGAGCAACAagaaaaacttgaaaaaatTTCCAAAGATTTGAACGCTGCCACCTTTGGTGTAGAACACATCCTTAGAGAAATGGGGCAGGTTTACGAAGCCCGTATGTCAGTACGAAGCACAGAAGTAACAAATGAGGCAAAATTAAACTTCTCCGCTCTTCCTCAGATAGCTGCAGAAATTATAGTGACTGGATATCCACTGGAGATAATGGATGGAGATGCTGCTCATGTTCCTCTGATCTGGGTTTCAGCAGTTCTAGATGAACTTGTGAAGATACTGGGAGACCAGAGAGTGTTTGTGCTGTCAGTTCTGGGGATTCAGAGCTCTGGGAAATCCACCATGCTGAATGCCATGTTTGGACTCCAGTTTGCTGTCAGTGCTGGAAGGTGCACCAGAGGAGCCTTCATGCAGCTGGTCAGAGTGTCAGAGGAGATGAAAGAAGAGCTGAAGTTTGACTACATTTTAGTTGTTGATACTGAAGGTCTGCGAGCTTTAGAGCAGGCTGAGAAGACAACCATACATCATGACAATGAACTCGCCACATTTGTTGTTGGTCTTGGAAACCTGACGTTGATCAACATCTTTGGAGAGAATCCTGCTGAGATGCAGGACATCCTTCAGATTGTTGTTCAAGCCTTCTTGAGGATGAAGAAGGTCAGACTGAATCCCAGCTGTTTGTTTGTCCATCAGAATGTTGGAGACATCACTgctggagagaaaaacaaggaaggaaggagacgCTTACAGGAAAAACTGGATGACATGACAAAGCTAGCATCTAAAGAAGAAGATGGTGATGCTCAATGTTTTAGTGATATCATTTCATTTGATGTACAAAGTGATGTTAGGTACTTTTCACAGCTCTGGGAGGGCAGCCCGCCCATGGCACCACCAAACCCATTATACAGTGAAGATGTTGATGAGCTAAAAAGAAAGATTCTGTCAAAAATATCCACAAACCGTGGTGTGACACTTTCACAATTTAAATCAAGCATCAATGATTTGTGGAATGCACTTCTAAATGAAAATTTTGTGTTCAGCTTTAGAAACACTCTAGAGATTGCAGTGTACAGGAAACTAGAGCATGAATACACTAAATGGACCTGGAGTCTAAGGAGTGCCATGCTTACAGTTGAGAACAAACTGCTTAACAGAGTCAACAATGAAAAATCAATGAGGATTGAGGAAAAGGATCTTGTGGCACAAATGGCAGTGTTGAAAAAAGAAGTAGATAAGGCAGTAGATCACTTTTTCAGAGAGGACCATGATAAAGATATTTTGATCCAATGGCAGGAaagatttgaaagaaaaatcatGGATCTTTACAGTGAACTTGTGGAAGTTGCAAAAAGAAAATTAGATCATGTTTATCAACAAAAAATTGCAAGAGAGAAAGTTGATGAAGAAAAGACAAGGTATGAAAATAAACTCTTCAAACTGAGTAAAGAGCTTGCTTTCAATTtgaaaaacaaccaaacagATGGAAATGCACTCGAGAACGAATTTGATGATGTCTGGTCCACATGGCTCTCTGAACTGACGCAGGATGCACCCATGGTTGGTGACATTGATGTTTTTGGAGATGTAACAAAAATTTTGTCTGAAACATATGAGCTGTCATTTGTCTGTGATCAGCAGAATCTGGGCAGTTACAGAAAACTTGATGCCTTAGGAGATTACTCAGATTATGTTATTTTCAAAAAGTCTCAAGAGCCCCTTCCACCAGAGGAGCACCTATCAGATGTAGACATAAATGTGGATGAAAATGAGAAATCTGGTCGATGGCATCGTGCACGCAGCTTCTTCAGTAATGCACGTAATACGGTTTATTCAGCAATACATAATACAATGACACATTCAGAAAACAAGCTTACAACAAATATGTTATCATCAAAAGATAACGATCAATTAAGAGCCCTTGTAAATAATGTATTCCAACAAAGTAAGAATGAAATTCAGAGAATGTCCAGTGCAGAGCTTGGGTACAATCACAGCTACATTCAACAAATAATTGAATCTGTCAAAACCAATATAAATGAACATCAGCAGAAGGTATCTTGGTATACACTCAAGAAGGAATTCACAGTAGACCTCTGCCTTCATGTCTGTAGTTTTGCTGCTGACCAATTTACCAAGCTTCACATGAAATTCAAGGAAGCTAATAATGTCAGACTCTACCTGATAAAACAGAAGCCTCAGTACTTCAACATCTTCAAGAAATACTACAACGGTGTGACCTCGACAACAGTGTTTGGTGAATTCATTGTGAATAAACTTGAGCCGTCTATACTGCAGGCAGCATACGACCAAACTGCCATCGATGTAGCCGAGAAAATGAAACGTGATGTTCCAGCGTTCAGTGGAAACAGATCAAATCTGGAAAAACACATTCTGACATCACTAGCGGAAGAGGAAAACTTTGAGAACTATATTGAATATCTTCACAAGCCCAAAGaacatttcagtcattttattgccaaggaagtaaataaatacctaCTTAAAGACAAATGTCAAGAGGTTCTGGAAACTATCAAAACTAACATAAAGTCTAAGGGAAGGTGTGTGATGGACGCTGTCAATAAAGCAACAGAAGACATCAATAAAAGAAGTGGAAACATCGACATGTGGCTGGAGTACTTCTCCAAAGAGCTGAAAGATGAGCTTCAGTTCAAAGAAGAATCATGTCTTGAGCAGAAAGAAATTACAGACCTTGGCTTTCTTCAAGAGGTTGTAAATAAGGGCCTGACTGACACCATGGCAAAGTTATGCAGTGAATTCAAAACCATTTCTGACCTCAAACAGGAAATGTTCAAGAAGAAACCACACAAGGTTCTGATTGAACACCTCTGTCGATGCTGCTGGGTTCAGTGTCCATTCTGTAATGCCATCTGTACCAACACAATGGAGGATCATGATGGAGATCACAGTGTCCGTTTCCATCGCAACTGTGGAATCAGTGGATGGTCTTTCATGTTTTCAGAAAACCTTGGAGTTGATTTCTGCACAACTGCTGTTTCAAGTAACTTGTTCTTTCGTACATCTGGTGGTGTGTTTGCTTTTAAAGAGTACAGAAAAGCAGGAGGAGAATATGCCAAGTGGAACATCAGCCCTGACACCTCTGAGGTGCCCTACTGGAAGTGGTTTGTGTGCAGGTTCCAGGAAGACCTGGAAAAGCACTACAAGAGAAAGTTCACAGGGAATGGAGAGATTCCTCATGAATGGAGGGATATCACTAAAGATAGAGCCATTGAAAGCTTAAATGAGTTATAATAGTTGTAATTAGTGCTGTGACACCATGGATATTTGAGAGGAAAACAGGAACAGCTACACCTAATGTGAGAGAAATGAGAACCAGAATAAatgtaacacaaaaaaaatcaaactctCAAGAAAAGGCCTGGGACTGTCTTTCATCAGTATTTCCTGTTGATGTGTTAAATATTGCTGAATAGAGAGGTTACATTCCTCAGTTTCATCTGATGTTTTAGAGTTTTATTTCAGAGAACAATAAATTTCTTATTTCTCTTctaaatgataataattatgactgctatacattttaatttgggCCTTACTTAGTAAAACTCTGTTGCTATTACTACATGCAAGACATACTACACATATAATTTCTCTTCTGCATGCATTAACTTCTCAAGATACTGAActgctgtataaaataaattatatttgttcaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472224 lncRNA downstream 21452 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 22988 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 22988 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 22988 305279 ~ 305873 (-) False LOC117596423
TU472206 lncRNA downstream 135728 169832 ~ 193133 (-) True G398140
XR_004577543.1 lncRNA upstream 75426 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 256079 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 303363 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 502897 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 508706 847745 ~ 848753 (-) True G398394
XM_034301553.1 mRNA downstream 4147 312408 ~ 324714 (-) True pick1
XM_034301551.1 mRNA downstream 18625 299979 ~ 310236 (-) False plbd1
XM_034301550.1 mRNA downstream 18626 298761 ~ 310235 (-) True plbd1
XM_034301547.1 mRNA downstream 41724 146928 ~ 287137 (-) True LOC117596420
XM_026911527.2 mRNA upstream 2032 341071 ~ 350569 (-) False LOC113525087
XM_026911528.2 mRNA upstream 2032 341071 ~ 350569 (-) True LOC113525087
XM_026911533.2 mRNA upstream 34104 373143 ~ 399186 (-) False LOC113525089
XM_034301540.1 mRNA upstream 34104 373143 ~ 399186 (-) True LOC113525089
XM_026911532.2 mRNA upstream 78978 418017 ~ 459183 (-) False LOC113525088
TU472228 other downstream 3316 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 18206 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 135527 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 401204 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 546663 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 560489 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 568586 907625 ~ 907779 (-) True LOC117596481

Expression Profile