RNA id: XM_034301543.1


Basic Information

Item Value
RNA id XM_034301543.1
length 6012
RNA type mRNA
GC content 0.52
exon number 27
gene id mast1b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3433728 ~ 3464801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGACAAGCAGCTCGTGCATTCGGTGCTGATATCCCTACTGCAATAACGggaggcaaacacacacacacacacacacacgcactttcGCGTTGCATGTTAAAAAGCCGTCTTTTTTAACGCCCgagtcacattttttaaatgtttgcacGTGTTAACTGAACAGTTACACAGCGCGAGGGACTTCCTGCTGAGTGAGTCTCTCGCGcgctgtttttgtcttttgagGATGTGAccgttatttttaatttatttattttaaatcggAGCAGCCGTTATTTTTTTCCGTTACGAAAAGAGAATGTGGATATAGGCTATTCTTCTgtatattcttcttcttttaggGCGTTTACGTATTAAATCTGGTTTTCTGACCCGAACCGGGATGATAAGGAGCTCAGTAAGCTAACGGCTAACCGGGGAAAACAGAAAAGCCCTGAAAAGCACGGCTGCGACAGTGAAAAGCCCTGATGCTTGCTGTGTGCGTAAGGAAACGGTGATAATGCGTTAACCGGGATGTGGGGGTCGGACAGCAACGCAATGATTCAACATCTGTCCAGTGGACTGAGGAGCTCCCCGGTCTCGGGTTAAACACACCGGAACTGTTTACCAGCTGTCCTTCTTTCCCTTGCGGTACCGGCTCGTACCGGGACATCACCCAACCCAACCATGGACGATACCGGCATCATCCGGCGCAGGCGCCTGCAGGATCTTCCTCTGCCACGTAAAAGCAGCAGTTGCCGTGCCAGTAACAGGAAGAGTCTGATCCTCACCTCAACCTCGCCCACTTTACCTCGTGCTCACTCTCCTCTGCCTGGACACATCGGAAGCAGCCCATTGGACAGCCCTCGCAACTTCTCTCCCAGCAATCCGGCTCACTTCTCCTTCACGGCCTCCTCCAGACGggATGGTCGCCGTTGGTCTCTGGCTTCACTTCCTTCTTCTGGTTATGGCACCAACACACCCAGCTCAACGTCGTCCAGTTCGTCTCAGGAGCGTCTGCACCAGTTGTCCTATCAGCCCTCCATGGACGAGCTGCTCTTTCTGTCCAAACACTTCGGCAGCACAGAAAGCATCACGGATGATGATGGGGGGCGGAGCTCTCCACACACACGTCCACGCTCACGCAGCCTtagTCCCGGCAGATCTGCTTCCTGCTGTGACAACGAGATCATGATGATGAACCATGTGTACAAAGAGCGCTTCCcaaaggcgACGGCTCAGATGGAGGGGCGTTTAACAGACTTTATCCACTCGTTCTCTCCGGACAACGTGCTCCCTCTGGCTGACGGGGTCCTGAGCTTCATCCACCACCAGATCATCGAGCTGTCCCGAGACTGCCTGAACAAATCCCGAGACGACCTCATCACCACCATCTATTTCTACGAGCTGCAGGAGAACCTCGACAAACTGCTGCATGATGCGTACGAACGGTCAGAGAGTTCAGAGCTGACCTTTATCACAGAGCTGGTGAAGAAGCTCCTTATTATCATCTCTCGCCCAGCACGACTCTTGGAATGTCTGGAGTTTAACCCAGAGGACTTTTACCACCTGCTGGAAGCGGCCGAGGATCACGCCAAAGAGGGACACCTGATGAAAACAGACATCCCACGCTACATTATCAGCCAGCTAGGCCTGACCAGAGACCCTCTGGAGGAAATGGTCAATCTGGAGAGTTATGACAGCGAGGGACCTCTCACACCTGAGACTGATGACTCTACAGAGgggaagatgaaggtgatgaaacCTCCCGGAGAAGCTGACTTCCAGACCATAAAACTGATCAGCAATGGCGCATACGGgGCGGTGTACCTGGTGCGTCACCGGGAGACCCGTCAGCGTTTCGCCATGAAGAAGATCAACAAGCAGAACCTGATCCTGAGGAATCAGATCCAGCAGGCCTTCGTTGAGAGAGACATCCTTACTTTCGCTGAGAACCCATTTGTGGTCAGCATGTTCTGCTCTTTCGAGACCCGCAGACACCTTTGTATGGTCATGGAGTATGTGGAAGGAGGAGACTGTGCCACACTGCTGAAGCACATCGGCGCTCTGCCCGTAGAGATGGCACGCATGTACTTTGCAGAGACCGTCCTTGCGCTCGAGTACATCCACAACTACGGTGTGGTGCATCGAGACCTCAAACCTGACAAtctgttgATCACGTCTATGGGACACATTAAACTGACTGATTTTGGTTTGTCAAAAATGGGTCTGATGAGTCTCACGACAAACCTGTATGAGGGCCACATCGAGAAGGACACCAGAGAGTTCCTAGAtaaacagGTGTGTGGCACGCCAGAGTACATTGCCCCAGAGGTGATCTTACGGCAGGGATATGGGAAACCTGTGGACTGGTGGGCCATGGGCATCATTCTCTACGAGTTCCTGGTGGGCTGTGTGCCTTTCTTTGGGGACACACCTGAGGAGCTGTTCGGCCAAGTCATCACTGatgataTTGCGTGGCCTGAAGGTGATGAAGCACTCCCAGTCGATGCCCAGCACCTCATCTCTGCCCTGCTGCAGACCAACCCACTGCTCCGCCTGGGCACAGgaggTGCAGTAGAAGTGAAGCAGCACCCGTTCTTTGCTGATTTGGACTGGAACAGTTTACTGAGGCAGAAAGCTGAGTTTGTACCTCAACTCGAGTCGGAGGAGGACACCAGCTACTTCGACACACGATCAGACCGTTACCATCACATTCACTCGTTTGATGAAGACGACACCAATGACGATGAACCCGTCGAGATCCATCGTTTCTCCTCCTGCTCACCTCGCTTCAGCAAGgtgtacagcAGCATGGAACACCTGTCCCAGCTGGAGCACAAGCCTGTGGTGACCCGCAGGGAGCCCAGAGGTCATCGGGAGGACCGTGCAAAGAGGGAGAGCCTGGGCAGCTTCACCCTGAGAGACAAAACCTGGAGGACCGGCTCTCCTGAGATgaaacGCCTGTCCTGCTCCGAGTACTCCTTCACCGAGTCCGACTCCAGTCCTCCTGGCGTCCGCCGCCGTTTCTCTGCTCTCATGGACACACACCGCATCTCCTCTCCTCTAGAgactgacacagacacacacactcgccctACACCAGTCAAAACCAGAGGGACGTCACTAGAGGGCGCTACGATGGCATCCGGCTCAGGTGTGGGCGTGGCCGAGTCCTCCACTGCAGCACCAGCCACACAAGGTTTAGATAAACTCCTGAAACCTGCTGATGCAGCTGTGACGTCAGCACCGTTTGCACCCAGAGCTCCGAGTGACGTGGTTCTGCGGCGAGCACGACATCAGCACCTCCCTGCTGATGGAGAGAAACAGACTCCGACCCGCTCTGGCACCAAGGTCATAAAGTCAGCCTCTGCCTCGGCCTTATCCGTCATTATACCTGCAGTGGAGCAGCATGGGACGTCCCCATTGGCCAGCCCCATGTCTCCGCGCTCCATATCATCCAATCCATCGTCCCGAGACTCGTCCCCCAGCCGGGACTATTCTCCCTCTATCAGCACTCTGCGCTCTCCCATCACCATCCAGCGTTCAGGGAAGAGGTACGGCTTCACGCTGCGCGCCATCCGAGTCTACATGGGCGACACCAACGTCTACAGTGTCCACCACATGGTCTGGCATGTGGAGTGTGGAGGCCCCGCCCAGGAAGCAGGTTTGTGTGCCGGTGACCTCATCACACATGTGAACGGAGAGTCTGTGCACGGGCTGGTTCATACAGAAGTGGTGGAGCTCATTCTGAAGAGTGGGAATAAAGTGACAGTGACCACAACTCCATTTGAGAACACGTCCATTAAGATCGGACCGGCGCGAAAGCCCAGCTCCAGGGCCAAGATGGCACGACGCAACAAGAAATCCATCACCAAGGAGGGACAGGAGAGTAAGAAGCGAAGCTCTTTGTTCCGTAAGATCACTAAGCAGTCGAACTTGCTCCACACCAGCCGCAGTCTTTCCTCTCTGAATCGCTCTCTGTCGTCTGGTGACAGTCTCCCTGGCTCTCCCACACATGGCCTGTATGCCCGCTCACCCCCTGACTCCGCCCACCTCGGCATGTCGTCCCAGAGCAGCTCCCCAGCGTCGTCCACTCCGAACTCTCCAGCTACGTCTCATCACATGCGCCCGAGCTCTCTGCACGGCTTGTCCCCTAAACTGCAGCGCCAGTTCCGTTCGTCTCGCTGTAAATCAGCCGGGAGCGTCCCTCTGTCCCCGCTGGCACACACTCCCTCACCGAGCACGCCCAGCGCCACGCCCACTTTCCCCGCCAAACTGCACTCCTCACCGCCAATAACACGGCCCCGCTCACCTCTCCTCACACGGGTACAGTCAACCGAGAAGCCGGCTCCGCCCTCTCCACCATCGTTTGCCTCTTTTCCATCGTCGGCGGAGAAAAAAGGTGGCCTGAGGAAACATGGCGTGGAGGAATACCGCATGCTGCAAAGCCTGCAGGAGATTGAAGGCGAAAACGCGCTCACAGACACGCTCCAGACGGCAAACAAGCAGGACTTGCCTTCCGTTCCTGACTCAGCACTAAGCAAGAAGGACAAACCGTCGGAAGGAACAGAGACAACGAGTTCTTCTAAAACCCACGATTCCATCAAAGCCATAACTACAGCAATCTGTGAACCTGCAAAGCAAGAGAAATTTGCATCAAAGAGCCCGGCCAAGCAGGATTCGATCTCTGATGTCAAAGAAAAACCTGGAGGAAAGACGCCATTGCTGAGCGTAGAAACCCTTTTGCCGAAAACACCAGAGCAGGGTGgaaaagagcgagagaaaggAAGAGCAGCTTGGGAGAATGATGCAAGAACGAAATCTGGGCTTGTGGAACTGGGGAAGTGTGTGAAAACCCCCCAAACTGTAGAGGTTAGAGTGGAAGTTGGGAGCGGAGGTGGCGAGTACAAGGCTAAAGCTCCAGCACCCCCAGTGACGGACGCAGGTGTGCCCCAAATGAAATCCAAAGAGGAGAAGAGTTCAGTCCATTCTGGGTCAATCCGAACCCTTCGAGATGAGCGCTCTCACTTGGAGGTTTTGGAGGAAAGCCCAGCTTCTCTGTCTCCTTCCACTCCATCTCCCAACGCTGGCAAATCCCGCACCGTCTCCCCCAGTGACCGCTCGAGCTTCGTCACTCAGCTCACCAGCGTGGCCAAAACCGTGCTCGGGCCCATGAAGCTCGGATCACAGGACGGAGGGAAAGGGAAGGACTCAAGCACCAAAATGAGCGAGGACAAGCGGGCTGGAACGCTGGGGAAATCCGAAGCTTCATCTGGGGCCTGGCGCATAGCTACAGGAACGTGGCCTGGACCGGGATCCTCCAAATCAAAGAGCTCTAACAAGCATTCCTGAACTTCCTGGTTGTAACTTTTGGAGGGCAATGTGAAGTAAGCGATACTTAAGCGATGACCTAATACTTCCACAACCACCAAATCAACACTtatccaaaataataaaaaaagaaggtgCTCTCAGTCTGTCATTGTTAGATGCGTGGATGTGTATAGATGgtttttaaagctgcagtatgtaaCTTTTAAGGATTCACAGAAGAAAATTTTTAAACATCGTCAGTAGAGTGTATCATGTCTGTTTACATTCAAGTAGTATTGAAATAATTCCCAGGGTTGTGGTGTCAAGCCatgatgacctttgacctgagTCAGAAAAACTCATTTACTGTTTTAGGCTTTTCAGGGCCACATCCTGATTTTGGCAAGTTTAATAAGCAGTGGAGTTTAAGCTAGATTTAGTCAGCCAGTCACAAAtttgatcatgtgacatcagTTTGAaaattgttagctagctaggaaACGTAGCTACATAGCAAAATAGCTTACTACACTTACTCAATATTGCAACTGTCATTATTAAAAAAGTTATATACCGCAGCTTTAATGTAGATGTAACACCAGATTAGTATATAGCTTAAAAAGCGCTGTGTGTAGCTGCATGTTAGATATTGTGAatagaaaagaaattaatagagactatgatattaaaaaaaaaaaatactacacaaAGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474150 lncRNA downstream 2446 3414965 ~ 3431282 (-) True G399629
XR_004577534.1 lncRNA downstream 70117 3360671 ~ 3363611 (-) True LOC113534314
TU474141 lncRNA downstream 70132 3360674 ~ 3363596 (-) False LOC113534314
TU474142 lncRNA downstream 70132 3360674 ~ 3363596 (-) False LOC113534314
TU473957 lncRNA downstream 138455 3286582 ~ 3295273 (-) False G399489
XR_004577577.1 lncRNA upstream 50011 3514812 ~ 3516233 (-) True LOC117596450
TU474294 lncRNA upstream 96347 3561148 ~ 3562361 (-) True G399727
TU474308 lncRNA upstream 120100 3584901 ~ 3585214 (-) True G399738
TU474312 lncRNA upstream 136245 3601046 ~ 3635560 (-) True G399742
TU474360 lncRNA upstream 264138 3728939 ~ 3729385 (-) True G399783
XM_026926985.2 mRNA downstream 6201 3419380 ~ 3427527 (-) True atg4db
XM_026927230.2 mRNA downstream 30198 3382114 ~ 3403530 (-) True evplb
XM_026927232.2 mRNA downstream 39038 3382114 ~ 3394690 (-) False evplb
XM_034301771.1 mRNA downstream 124331 3295919 ~ 3309397 (-) False gga3b
XM_034301770.1 mRNA downstream 124331 3295919 ~ 3309397 (-) True gga3b
XM_026927743.2 mRNA upstream 23472 3488273 ~ 3490167 (-) True junbb
XM_034301666.1 mRNA upstream 120473 3585274 ~ 3600490 (-) False ubn2b
XM_034301665.1 mRNA upstream 120473 3585274 ~ 3600488 (-) True ubn2b
XM_034301667.1 mRNA upstream 120473 3585274 ~ 3600486 (-) False ubn2b
XM_026927512.2 mRNA upstream 282681 3747482 ~ 3754120 (-) True LOC113534607
XR_003403536.1 other downstream 71902 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 72774 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 122296 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 157773 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 659448 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1496301 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 2122597 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2708187 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2906849 6371650 ~ 6374490 (-) False polr1h

Expression Profile