RNA id: XM_034301546.1


Basic Information

Item Value
RNA id XM_034301546.1
length 6830
RNA type mRNA
GC content 0.46
exon number 29
gene id LOC117596420
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 146928 ~ 287137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAACAAGGAGCCAAATTACAGGTAGATGCTCAGTACCCACAGCACTATGTTGCATGGGACATAATAATTCCTGCAATAGAGGAGGCTGTTTTTGCGATGAGATATGTGTGCAATTTGGGGACTGCTGTCCAGATTACTTACAAACCTGCAAAAATGGGGGATCAATCCCTTATCAACCACCAGtgcCAACTACAATGACTACAACACCAACTACACCGAACAAtgaaatttttcaATTTCCAACCTCAACAACAACTGAAATGCCAACTACAACGACTACAACACCAAGTACACCCAACCAAGTGGGAACAATCTTGTACCAACCACCAGGATACTTCTACCCATTTGGACTTGGAGATATAGTAAATGGAAAGATAGATGATGGAAGTTCATCTGTCATCACTCTTCAGCAaccatttatatattttggaaaCACATACAACCAAATGTTTGTAAACAACAATGGACACTTAACCTTTAATAACCCATGGAACAGTTTCACTCCCTACCAACCCCCCGCGCATGGTGGACGGGACATCATTGCTCCATTTTGGACAGATATCGATAATCGTGGAAATGGTGTCATTTCATATCAGCAGTACACTTCTGGCAGTGTTCTCACTCAAGCTACTCAAGACATAAATCAATATTTCCCCCAGCTGAGTTTCAGTGCCACCTGGGTCTTTGTTGCAACATGGGATCGAGTAGCATACTATTCTTACTCTGGCACGgaAACATCTTTCCAAGTAGTTTTGATTTCCAATGGCCATCTTTCATTTATTCTGATGAACTACGGTGTGATTGCTCCAACATCCCACCATGTGCAGGCTGGTTACGACACAGCTAGTTCCAATGACTATTTCTCAATTCCTGGGTCTTTTCAAAACAACTACACAAGTTTCACCTACAGCAGTAATGTGCATGTCTCAGGAAGATGGGCATTTCGTGTAGATCATGGATcacaaatgtgtcattttaatgGCACCTCTGTGCCACGTGATACCACGTTCTGGACGGATAACTCTTGCCAGCAAAAATGCACTTGCACCCAGGCAGGTCTCCAGTGCATCTCACAGCCATGCACATTTTCTCAAGCCTGCCGTCCTGCTGCGTTCCAGTTTGGCTGCCAAAATATACCACGCAAAACCTGCACCATTTATACTGATCCCCACTACATCACCTTCGATGGTCGAAGCTTTCCCTTTCAAGGAATCTGTACCTACATCCTGTCTGAGGCCTGTGGAAATGACGTGCCATACTATCGCGTTGAAGGAAAGAATGAGCATCGGGGTAGTACATATCTGTCATGGATACGCCTGGTTAGGGTATTTGTCTATGACAAAGAACTGGAACTGGTGAAAGGTCATCCATATGAGGCCAAGGTGAATGGAACGTTTGCAGTAACACCATTCAGCCTTAACAATGGTTCCATTCAGGTCTATCGATCAGGTGGTTCTATAGTCATCAGCACAGATTTTGGACTGGTTGTTACATATGATACATATAGGTATGTGACCATCAATGTACCATATGAGTACCAAAACAGCACATGTGGCCTGTGTGGTAACTTTAATTACCGCCAAGATGATGACTTCCGCACACCTTCAGGAGAAATCTTGAGCTCAGACTTGGAATTTGGAAACTCCTGGAAGGCACAGGGTGACAATGACCCCGGCTGCGAGAAGACCCAGTGCTCAGGCCTAGAATGTGCAGGTTGTACCACAGATCAGAGCAACCTTTATAATAACTCGGATCACTGTGGGATCATGGCAGATATTAATGGTCCCTTTGCCAACTGCCACTCAAGTCTGTCACCTCAGACCTTTATAAACAGCTGTGTATATGATCTATGTGTGGGAGGTGGATACCAGCCAATTCTGTGTGGAACAATCAGTGTTTATGCTACTCAGTGCCAGCAGCAAGGCATACAGCTGGGTCAGTGGAGGAGACCAGGATTCTGTGAAATGCCATGCCCTGTCCACAGTCACTATGAATTCCAGGGAACAAGCTGCCCAGCAACATGCAGTAACCCCTCTGCACCTTCACACTGCACCTTACCAAATCAGGAAAGCTGTATCTGTGATGCAGGATATGTCCTAAGTGGTGGTGAATGTGTTCTTCAGAGTAACTGTGGTTGCACTTTTGAAGGACTTTACTATGCTGAGGGTCAATCAGTGGTATTGGACAGTGACTGTGGCAGGCTATGCACCTGCACCAATATGGTAATGAGCTGTCAACATCATCAGTGTGGCCCACAGGAGATGTGTACCACCAATAATGGTGTAAGGGGCTGCAGACCTATCAGTTATTCCACCTGTTGGGTTGACCGACTAGGCTCATATCACACCTTTGATGAACTGGCTTTCAGTTATCCTGGAGCCTGTGAACTCACCCTCACAAGAGTTATAGGATCATCCCTACTAGCTAACTTTGCAGTGATCATACAGAAAGTTCCCATGGGTCTTCAGGGCTTCTCAAAGTTGCTTAAATTTGAGACAGATGGAAAACGGATCTCCATAGACATGAAAGAAGGAGGAAGTGTGCAGGTTGATGGCCAGGTAGTTGCTCTACCTTTCAGTGTTGGCAATAGTCAAATCCTTATCTACCACAGCAGTGTGAACAGTATCATTATAGAAACATCCTTTGGGGTAACTGTGAGAGCTGACTGGTCACAGCTAATCAGAATCACTGCACCCAGCACCTACAATGGTACACTTGGAGGCTTGTGTGGGAATTTCAATGGAAACCAAGGAGATGAATTTTACAGCCCAGGTGGAGTCTTGTTAAATACTGCACAGGTGTTTGGGGATAGCTGGAGAAATGGGTCTCATTCAGCCAACTGCATAGAATCAGACGTCATCCAACCAGGACAGAACAGAAGCGAGTTCACTGAGTACTGCAGCATCATGGCCTCTACAGATGGGCCATTTGCTCAGTGCCACAGCAGTCTGAACCCTTACATATGGATAGCACATTGCAGACACAATTTGGAACAGACCCATGGTGCCATAGAGGCCTTGTGTGAGGCTCTACAAGCCTACTCTGTACTCTGCAAGCAAAATGGCATTAGTGTAGGAGAATGGAGAAATATTACCAACTGTGATTTCCCATGCCCAGCCCATAGCCACTTTGAGGAATGTGGCACTTCCTGCCCTGCAGCCTGTCCCAGTCTGTCTTTTCCCTTCCCTTGCACTCAATACTGCCAAGAAGGATGCCAGTGTGATAATGGGCTTCTGCTAAGTGGAGACCAGTGTGTTCCCCCTACTGGTTGTGGCTGTTTTCATGAAGGCCGTTACAGGCAGAGTGGAGAGCAGTTCTGGTATGGTGAGCAGTGTCTTGTCCATTGTGTCTGTGATGGGACCTCAGGTATCGTCCACTGTAGTTCATCATCTTGTCAAGATCAGGAAATATGCCGTGTCATTGATGGAGAATATGGCTGCCATTCTCAACCCAGTGCTACATGCTCTGCTTCAGGGGACCCCCACTACACCTCTTTTGATGGATATAGATTTGATTTCCAGGGTACATGCCAATATACACTGGCAACTGTATGTAACGATACTCTAGGGCTACCATATTTTGAAGTCACTGCACGAAATGAAGCATGGAATGGACTCTCAGTGTCAATCACTGTTGAAGTTAATGTCAATGTTTCAGGACATCTGGTGCACGTTTCACGCAATATGTATGGCACAGCAAAGATTGATAGTGAAACCAGGAACCTTCCTGCCCTTCTTGACTCTGGCCGTGTGTCAGTTTACTCCAGTGGACAGAATACATATATTACAACTGACTTTGGCCTAAGTGTGAGTTACGATGGCTCTTGGGTGGTGCTAATCACAGTTCCAGGGAATTACAGTGGAGCCACATGTGGCCTCTGTGGTGACTTCAATGGTAACAGCAATGATGATTTCCGTATGCGATCTGGTACACTGACTTCTTCTGCTTCAGAATTTGGAGCTGACTGGGAAGTGGGGAATGACACAACATGTAATCACGGTTGTGGAGACTCATGCTCAGCATGCCAAGACCCATCTATAGCACAGTCTCTGTGTGCAATCATAATTGACAATCGGGGTCCTTTGAGTTTCTGTCATGCACATGTTGATCCTCAGGCCTATTTTAATGACTGTGTCTTTGATCTATGCCTCTCTGGGCACAGAAGTGATGTACTGTGCCGTTCCATTGAAACGTATGTTGGTAAATGTCAGTCTGCCAATGTCAGGATTTACCCCTGGAGAGAAAACACGACATGCCGTATGGACTGCCCCATGAACAGTCATTATGAGCTATGTGGCTCAGACTGTGGAGACACCTGTGCCAGCTACATAAATGCTACGTGTGACACAGCATGCAGAGAGGGCTGTTTCTGTGACGAAGGCTTTGTAAGGAGTGGTGGAAACTGTGTGCCTGTGGAGCAGTGTGGTTGCTCATACAATGGATTGTATTTCCAGGCCGGTGAGCAGTTCTGGACTGAAGGATGTTCACAACGCTGTGAGTGCTTTGCTCCAAATGACCTGCGCTGCATCTCTGCCTTTTGCACTCCCACCCAGGAGTGTGTGGTCAAGAATGGTAGACTCGGCTGCTACAGCCAAATGTCAACTTGCATGGTCTCAGGCGATCCCCATTATTTTACCTTTGATGGGGCTGTGGCCCACTTTCAGGGTACTTGTTCATATGAGATTTCTCAGACATGTGGGAGTGTCTCTGACAACGGTCTACAATTCCATGTGGTGGCAACCAACATGCATCGTGGGAGCACGGTTGTGTCCTTTGTATCTGTAGTGGATGTGTGGCTAACTAAACAACAGGAGCAAACACGAATTACAATCGGACAAAACAGGAGAGTGAAGGTTGATGGGAAGGAAGTGGACTCATCTGCTTATCAAATCAGTCATCTAGCAGAAATATATCATGAGCAGAATTTTATAGTTGTGAATGCGTCACATGAGCTCATGGTCTACTTCGATGGTCGTTTTACACTTTTAGTGAGACTGGGCCCAGGCTTCCATGGATCTGTATGTGGGATGTGTGGTAACAATAATGGAGATCCTACAGATGACAAGACCCTGCCGGATGGAGCACTTGCACCAAATGATGCTGTTTTTGGCAACAGCTGGAAATCAAACATCAGTAGCCCAGGATGTGGTGCTACTGACCAGCTTGGTGATGCTAATGACTGCCCCTTCAAAGAAGAGTACTCTGAACTCTGCAGCATCATCACCAACACCAGTGGACCTTTCCGGCACTGCCATTTCCATATCAACCCTGAATCTTacttcacttcctgtgtgtatgACTTGTGTGCTTACCCACAGTCATGGGGACAAGACCTGCTTTGTTCAACTGTGGAGGCCTATGATGCTGCTTGCACCATACTGGAGCTCCAAATCCCAGACTGGCGCTCTGATCTATCTTGCTCAACAGTGGACCCCTGTGAGGCTCTGGACTGTACTGAGAATGAATGGTGCGGGGAGAAAGATGGCATCTATGGCTGCTTCTGTAATGAGAATTATCCCAGACCGAACCCTGAATCTTACAACTCTACTGAAATATGTGAGAGCAGCTCTGGCACCATGATTCTGTCCCGCTGTCAGCTGTTTGAAGCTGGTTTTCCTGCTAACAACCTGCACTTACATGACCCCAGCTGCAAAGGAAAAGTTGAAGATGGCAGACTGGTTTTCCACTTTGATAATGATGACCACATCTGTGGCACAAATCTCACGGCCAATGGCACCCACTTCATTTATGAGAACCAAATCCAAGGGGAGGTGGACGCACCAGAAGGCTCTATTCACAGGGAGAAAAGATTGGAACTTAACTTCTCCTGCATCTACCAGCTCACCCAGACATTCAGCATGGACACAGAGCTGAATCCTATTCAGAGCATTGTGCACAAGATTCTTCCAACTGGGCAGGGCATGTACCAGGTCAGGATGATTCCCTATGAGGATGCTGGATTCTCCCACCAGTACACTGGCAGGGTGGATATAGAGGTGGGCCAGCAAATCTACATAGGTGTCTTTGTTCAAGGAGTCGACAGCCGTCAGATTGCCACAGTGATAGATTCCTGTTGGGCTACACCTGTAAATGAGGACAACTATACTGTCCGCTGGGACCTCATCACTAGAAAgtGTCCTAATCCACACGATGGCACAGTGAAGATTTTTGAGAATGGTGTCTCCACAACTGGACGATTCTCCTTCaagatgttttcttttcatgaaaatgaatcCAAGGTTTTCCTTCACTGCAGCATTCACCTTTGCCTTCTGAGAAATCACAACTGTGCAGCGcGTTGTTTCCCTGGATATCGCCACCGTTCAGGCAGGTCTGTGGACATTCATGACAGTGCCTCCATCTCCATGGGGCCTTTTATCTGGACCATAAAAGCAGAGGTGTGTAGGCccaagaggaaataaaaatgtcttttattgcATTTCCTGAGCATCCGGATCATTCTCCAAATGCATTATGAGCAAAGATTTTACGGCTTTAGTTTCTCTGTTAAAGAGTTTCCATGACTTCTGAATCATAAAGAaatattaattgttaattaCACAATGATTGAATCTGTCTGTTTAAATGATTGAACATCCTTTACATTCATTCTTATTACTCTTAACCTTTGAGGGAGTTTGAGCTTGAGTTTGAGTAACAATACACATTACACTGACTGGGAGAATAAATTAATGTTGGGTGTTCAAATGGTGTGAAATATGTACTTCACCCTATAGAATGATTCTACAGTAATCCTGAAAATGTTTTCCATGTCTAGGCTGTTTTACGATTTCAATAAAGTTCTCTCTAACTGAGAATGTTCTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472201 lncRNA downstream 39153 107329 ~ 107775 (-) True G398135
XR_004577548.1 lncRNA upstream 115890 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA upstream 115890 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA upstream 116096 305279 ~ 305873 (-) False LOC117596423
TU472224 lncRNA upstream 117935 307118 ~ 307409 (-) True G398158
XR_004577543.1 lncRNA upstream 225282 414465 ~ 417319 (-) True LOC117596419
XM_034301549.1 mRNA downstream 30161 79388 ~ 116767 (-) False LOC117596421
XM_034301550.1 mRNA upstream 109578 298761 ~ 310235 (-) True plbd1
XM_034301551.1 mRNA upstream 110796 299979 ~ 310236 (-) False plbd1
XM_034301553.1 mRNA upstream 123225 312408 ~ 324714 (-) True pick1
XM_034301536.1 mRNA upstream 139678 328861 ~ 339349 (-) False LOC113525084
XM_034301537.1 mRNA upstream 139678 328861 ~ 339056 (-) True LOC113525084
trnar-ccu_18 other upstream 121400 310583 ~ 310655 (-) True trnar-ccu_18
TU472228 other upstream 130551 319734 ~ 325545 (-) False pick1
TU472265 other upstream 285383 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 551060 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 696519 885702 ~ 890280 (-) True LOC117596444

Expression Profile