RNA id: XM_034301548.1


Basic Information

Item Value
RNA id XM_034301548.1
length 6787
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC117596421
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 79388 ~ 116767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtacgTGATGCTGAGTTCAGGGAAACTGCTGCAGAGGGTACAAGAAGAGTAGGAGTAGCATCAGTACTCACAGGTACTTCTGAGCTGCAGGCTGAGaaacccagagagagagagagagagagagagagagagagagagaggggggagagaggggCATCCTGAGTTTCCTCAGCAGTGACTTCCCAGGCAAGGAGATGTTTTTGACACAGGCGAACACAATGAGGTTTCTAATTCCACTGTGTGTGCTGATAATACACGTGGGACCAACCCTGAGCCATTTCACAGGACACTTCTACCCATTTGGACTTGGAGACATAGTAAATGACAGGATAGATGATGGAGGTTCATCTGTAATCACTCTTCAGCAaccatttatatattttggaaaTACATACAACCAAATGTTTGTAAACAACAATGGACACTTAACCTTTAATAACCCATGGAACAGTTTCACTCCCTACCAATTCCCTGCGCATGGTGGACGGGACATCATTGCTCCATTTTGGACAGATATCGATAATCGTGGAAATGGTGTCATTTCATATCAGCAGTACACTTCTGGCAGTGTTCTCACTCAAGCTACTCAAGACATAAATCAATATTTCCCCCAGCTGAGTTTCAGTGCCACCTGGGTCTTTGTTGCAACATGGGATCGAGTAGCATACTATTCTTACTCTGGCACGgaAACATCTTTCCAAGTAGTTTTGATTTCCAATGGCCATCTTTCATTTATTCTGATGAACTACGGTGTGATTGCTCCAACATCCCACCATGTGCAGGCTGGTTACGACACAGCTAATTCCAGTGACTATTTCTCAATTCCTGGGTCTTTTCAAAACAACTACACAAGTTTCACCTACAGCAGTAATGTGCATGTCTCAGGAAGATGGGCATTTCGTGTAGATCATGGATcacaaatgtgtcattttaatgGCACCTCTGTGCCACGTGATACCACGTTCTGGACAGATAACTCTTGCCAGCAAAAATGCACTTGCACCCAGGCAGGTCTCCAGTGCATCCCACAGCCATGCACATTTTCTCAAGCCTGCCGTCCTGCTGCGTTCCAGTTTGGCTGCCAAAATATACCACGCAAAACCTGCACCGTTTATACTGATCCCCACTACATCACCTTCGATGGTCGAAGCTTTCCCTTTCAAGGAATCTGTACCTACATCCTGTCTGAGGCCTGTGGAAATGACGTGCCATACTATCGCGTTGAAGGAAAGAATGAGCATCGGGGTAGTACATATCTGTCATGGATACGCCTGGTTAGGGTATTTGTCTATGACAAAGAACTGGAACTGGTGAAAGGTCATCCATATGAGGCCAAGGTGAATGGAACTTTTGCAGTAACACCATTCAGCCTTAACAATGGTTCCATTCAAGTCTATCGATCAGGTAGTTCTATAGTCATCAGCACAGATTTTGGACTGGTTGTTACATATGATACATATAGGTATGTGACCATCAATGTACCATATGAGTACCAAAACAGCACATGTGGCCTGTGTGGTAACTTTAATTACCGCCAAGATGATGACTTCCGCACACCTTCAGGAGAAATCTTGAGCTCAGACTTGGAATTTGGAAACTCCTGGAAGGCACAGGGTGACAATGACCCCAGCTGCGAGAAGACCCAGTGCTCAGGCCTAGAATGTGCAGGTTGTACCACAGATCAGAGCAACCTTTATAATAACTCGGATCACTGTGGGATCATGGCAGATATTAATGGTCCCTTTGCCAACTGCCACTCAAGTCTGTCACCTCAGACCTTTATAAACAGCTGTGTATATGATCTATGTGTGGGAGGTGGATACCAGCCAATTCTGTGTGGAACAATCAGTGTTTATGCTACTCAGTGCCAGCAGCAAGGCATACAGCTGGGTCAGTGGAGGAGACCAGGATTCTGTGAAATGCCATGCCCTGTCCACAGTCACTATGAATTCCAGGGAACAAGCTGCCCAGCAACATGCAGTAACCCCTCTGCACCTTTACACTGCACCTTACCAAATCAGGAAAGCTGTATCTGTGATGCAGGATATGTCCTAAGTGGTGGTGAATGTGTTCTTCAGAGTAACTGTGGTTGCACTTTTGAAGGACTTTACTATGCTGAGGGTCAATCAGTGGTATTGGACAGTGACTGTGGCAGGCTATGCACCTGCACCAATATGGTAATGAGCTGTCAACATCATCAGTGTGGCCCACAGGAGATGTGTACCACCAATAATGGTGTAAGGGGCTGCAGACCTATCAGTTATTCCACCTGTTGGGTTGACCGACTAGGCTCATATCACACCTTTGATGAACTGGCTTTCAGTTATCCAGGAGCCTGTGAACTCACCCTCACAAGAGTTATAGGATCATCCCTACTAGCTAACTTTGCAGTGATCATACAGAAAGTTCCCATGGGTCTTCAGGGCTTCTCAAAGTTGCTTAAATTTGAGACAGATGGAAAACAGATCTCCATAGACATGAAAGAAGGAGGAAGTGTGCAGGTTGATGGCCAGGTAGTTGCTCTACCTTTCAGTGTTGGCAATAGTCAAATCCTTATCTACCACAGCAGTGTGAACAGTATCATTATAGAAACATCCTTTGGGGTAACTGTGAGAGCTGACTGGTCACAGCTAATCAGAATCACTGCACCCAGCACCTACAATGGTACACTTGGAGGCTTGTGTGGGAATTTCAATGGAAACCAAGGAGATGAATTTTACAGCCCAGGTGGAGTCTTGTTAAATACTGCACAGAGGTTTGGAGATAGCTGGAGAAATGGGTCTCTTTCAGCCAACTGCATAGAATCAGATGTCATCCAACCAGGACAGAACAGAAGCGAGTTCACTGAGTACTGCAGCATCATGGCCTCTACAGACGGGCCATTTGCTCAGTGCCACAGCAGTCTGAACCCTTACATATGGATAGCACATTGCAGACACAATTTGGAACAGACCCATGGTGCCATAGAGGCCTTGTGTGAGGCTCTACAAGCCTACTCTGTACTCTGCAAGCAAAATGGCATTAGTGTAGGAGAATGGAGAAATATTACCAACTGTGATTTCCCATGCCCAGCCCATAGCCACTTTGAGGAATGTGGCACTTCCTGCCCTGCAGCCTGTCCCAGTCTGTCTTTTCCCTTCCCTTGCACTCAATACTGCCAGGAAGGATGCCAGTGTGATAATGGGCTTCTGCTAAGTGGAGACCAGTGTGTCCCCCCTACTGGTTGTGGCTGTTTTCATGAAGGCCGTTACAGGCAGAGTGGAGAGCAGTTCTGGTATGGTGAGCAGTGTCTTGTCCATTGTGTCTGTGATGGGACCTCAGGTATCGTCCACTGTAGTTCATCATCTTGTCAAGATCAGGAAATATGCCGTGTCATTGATGGAGAATATGGCTGCCATTCTCAACCCAGTGCCACATGCTCTGCTTCAGGGGACCCCCACTACACCTCTTTTGATGGACATAGATTTGATTTCCAGGGTACATGCCAATATACACTGGCAACTGTATGTAACGATACTCTAGGGCTACCATATTTTGAAGTCACTGCACGAAATGAAGCATGGAATGGACTCTCAGTGTCAATCACTGTTGAAGTTAATGTCAATGTTTCAGGACATCTGGTGCACGTTTCACGCAATATGTATGGCACAGCAAAGATTGATAGTGAAACCAGGAACCTTCCTGCCCTTCTCGACTCTGGCCGTGTGTCAGTTTACTCCAGTGGACAGAATACATATATTACAACTGACTTTGGCCTAAGTGTGAGTTACGATGGCTCTTGGGTGGTGCTAATCACAGTTCCAGGGAATTACAGTGGAGCCACATGTGGCCTCTGTGGTGACTTCAATGGTAACAGCAATGATGATTTCCGTATGCGATCTGGTACGCTGACTTCTTCTGCTTCAGAATTTGGAGCTGACTGGGAAGTGGGGAATGACACAACATGTAATCACGGTTGTGGAGACTCATGCTCAGCATGCCAAGACCCATCTATAGCACAGTCTCTGTGTGCAATCATAATTGACAATCGGGGTCCTTTGAGTTTCTGTCATGCACATGTTGATCCTCAGGCCTATTTTAATGACTGTGTCTTTGATCTATGCCTCTCTGGGCACAGAAGTGATGTACTGTGCCGTTCCATTGAAACGTATGTTGGTAAATGTCAGTCTGCCAATGTCAGGATTTACCCCTGGAGAGAAAACACGACATGCCGTATGGACTGCCCCATGAACAGTCATTATGAGCTATGTGGCTCAGACTGTGGAGACACCTGTGCCAGCTACATAAATGCTACGTGTGACACAGCATGCAGAGAGGGCTGTTTCTGTGACGAAGGCTTTGTAAGGAGTGGTGGAAACTGTGTGCCTGTGGAGCAGTGTGGTTGCTCATACAATGGATTGTATTTCCAGGCCGGTGAGCAGTTCTGGACTGAAGGATGTTCACAACGCTGTGAGTGCTTTGCTCCAAATGACCTGCGCTGCATCTCTGCCTTTTGCACTCCCACCCAGGAGTGTGTGGTCAAGAATGGTAGACTCGGCTGCTACAGCCAAATGTCAACTTGCATGGTCTCAGGCGATCCCCATTATTTTACCTTTGATGGGGCTGTGGCCCACTTTCAGGGCACTTGTTCATATGAGATTTCTGAGACATGTGGGAGTGTCTCTGACAACGGTCTACAATTCCATGTGGTGGCAACCAACATGCATCGTGGGAGCACGGTTGTGTCCTTTGTATCTGTAGTGGATGTGTGGCTAACTAAACAACAGGAGCAAACACGAATTACAATCGGACAAAACAGGAGAGTGAAGGTTGATGGGAAGGAAGTGGACTCATCTGCTTATCAAATCAGTCATCTAGCAGAAATATATCATGAGCAGAATTTTATAGTTGTGAATGCGTCACATGAGCTCATGGTCTACTTCGATGGTCGTTTTACACTTTTAGTGAGACTGGGCCCAGGCTTCCATGGATCTGTATGTGGGATGTGTGGTAACAATAATGGAGATCCTACAGATGACAAGACCCTGCCGGATGGAGCACTTGCACCAAATGATGCTGTTTTTGGCAACAGCTGGAAATCAAACATCAGTAGCCCAGGATGTGGTGCTACTGACCAGCTTGGTGATGCTAATGAATGCCCCTTCAAAGAAGAGTACTCTGAACTCTGCAGCATCATCACCAACACCAGTGGACCTTTCCGGCACTGCCATTTCCATATCAACCCTGAATCTTacttcacttcctgtgtgtatgACTTGTGTGCTTACCCACAGTCATGGGGACAAGACCTGCTTTGTTCAACTGTGGAGGCCTATGATGCTGCTTGCACCATACTGGAGCTCCAAATCCCAGACTGGCGCTCTGATCTATCTTGCTCAACAGTGGACCCCTGTGAGGCTCTGGACTGTACTGAGAATGAGTGGTGCGGGGAGAAAGATGGCATCTATGGCTGCTTCTGTAATGAGAATTATCCCAGACTGAACCCTGAATCTTACAACTCTACTGAAATATGTGAGAGCAGCTCTGGCACCATGATTCTATCCCGCTGTCAGCTGTTTGAAGCTGGTTTTCCTGCTAACAACCTGCACTTACATGACCCCAGCTGCAAAGGAAAAGTTGAAGATGGCAGACTGGTTTTCCACTTTGATAATGATGACCACATCTGTGGCACAAATCTCACGGCCAATGGCACCCACTTCATTTATGAGAACCAAATCCAAGGGGAGGTGGACTCACCAGAAGGCTCTATTCACAGGGAGAAAAGATTGGAACTTAACTTCTCCTGCATCTACCAGCTCACCCAGACATTCAGCATGGACACAGAGCTGAATCCTATTCAGAGCATTGTGCACAAGATTCTTCCAACTGGGCAGGGCATGTACCAGGTCAGGATGATTCCCTATGAGGATGCTGGATTCTCCCACCAGTACACTGGCAGGGTGGATGTAGAGGTGGGCCAGCAAATCTACATAGGTGTCTTTGTTCAAGGAGTCGACAGCCGTCAGATTGCCACAGTGATAGATTCCTGTTGGGCTACACCTGTAAATGAGGACAACTATACTGTCCGCTGGGACCTCATCACTAGAAAgtGTCCTAATCCACACGATGGCACAGTGAAGATTTTTGAGAATGGTGTCTCCACAACTGGACGATTCTCCTTCaagatgttttcttttcatgaaaatgaatcCAAGGTTTTCCTTCACTGCAGCATTCACCTTTGCCTTCTGAGAAATCACAACTGTGCAGCGcGTTGTTTCCCTGGATATCGCCACCGTTCAGGCAGGTCTGTGGACATTCATGACAGTGCCTCCATCTCCATGGGGCCTTTTATCTGGACCGCAAAAAGCAGAGGTGTGTAGGCccaagaggaaataaaaatgtcttttattgcATTTCCTGAGCATCCGGATCATTCTCCAAATGCATTATGAGCAAAGATTTTACGGCTTTAGTTTCTCTGTTAAAGAGTTTCCATGACTTCTGAATCATAAAGAaatattaattgttaattaCACAATGATTGAATCTGTCTGTTTAAATGATTGAACATCCTTTACATTCATTCTTATTACTCTTAACCTTTGAGGGAGTTTGAGCTTGAGTTTGAGTAACAATACACATTACACTGACTGGGAGAATAAATTAATGTTGGGTGTTCAAATGGTGTGAAATATGTACTTCACCCTATAGAATGATTCTACAGTAATCCTGAAAATGTTTTCCATGTCTAGGCTGTTTTACGATTTCAATAAAGTTCTCTCTAACTGAGAATGTTCTGTTTA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472206 lncRNA upstream 53065 169832 ~ 193133 (-) True G398140
XR_004577548.1 lncRNA upstream 188306 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA upstream 188306 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA upstream 188512 305279 ~ 305873 (-) False LOC117596423
TU472224 lncRNA upstream 190351 307118 ~ 307409 (-) True G398158
XM_034301547.1 mRNA upstream 30161 146928 ~ 287137 (-) True LOC117596420
XM_034301546.1 mRNA upstream 30161 146928 ~ 189183 (-) False LOC117596420
XM_034301550.1 mRNA upstream 181994 298761 ~ 310235 (-) True plbd1
XM_034301551.1 mRNA upstream 183212 299979 ~ 310236 (-) False plbd1
XM_034301553.1 mRNA upstream 195641 312408 ~ 324714 (-) True pick1
trnar-ccu_18 other upstream 193816 310583 ~ 310655 (-) True trnar-ccu_18
TU472228 other upstream 202967 319734 ~ 325545 (-) False pick1
TU472265 other upstream 357799 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 623476 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 768935 885702 ~ 890280 (-) True LOC117596444

Expression Profile