RNA id: XM_034301550.1


Basic Information

Item Value
RNA id XM_034301550.1
length 2451
RNA type mRNA
GC content 0.49
exon number 11
gene id plbd1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 298761 ~ 310236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacagagggaattCTCCCCGTAAAAGTTTCACTTCTGTTCCTGCTCCTGACTGCGTCTGAAAAACAACAATGTCGGAGTTTAAActctgtgtttttgtcctgGTGTGTGCGGTGACTGCAGTGAGAACTGACTCTGTGCATAAGGCCACAGTGTACTGGGACCCTGGCAGTAAGACGGTGCTGCTGAAGGACGGGGTTCTGGATGACACAGGAGATGCTTACGGTTACTATAACGACTCGTTCTCAGAGACAGGATGGGGCGTGCTGGAGATCCGCGCCGGGTACGGACAAACACCTAGGGCTGACGACAAAACCTTCTTCCTGGCGGGATATCTGGAGGGATTCCTGACTGCACGGCAGATGATCGATCACTACACTAACATGTATCCTCAGCTCATTACCAGGCCCGACGTCCTGCAGGCCGTCAAGACCTTCATGACtacgcAGAGCGCCTGGTCTCGGCAGCAGGTGAAGCTGAATAAGACATCTGACCCTCTATGGGCTCACACCGGCTTTATCCTGGCTCAGCTGGACGGACTGCAGGCCGGCGCGGCCGAATGGGCCAAACGCTCGGGGAAGAAGgccctGTCACGGTTTGAGGTTCAGTTCCTGAATGCAGTTGGAGATCTGTTGGATTTGATACAGATGTTGGTTCCTGAGGCCAAACCTTCACTGAGAGGATTTAAAGAACCCCCAATGGGCCACTGCTCTGCCCTCATCAAGatgttacCAGGCTATGAGAACCTGCTGTTCGCTCACTCCAGCTGGTACGTTTATGCCGCCACAATGCGCATCTTCAAACACTGGGACTTTAAAGTGCAGGAGCCACACACTGCTACTGGAAAACTCTCCTTCAGCAGCTACCctgGTTTCCTGGTGTCTCTGGATGATTTCTACCTGTTGGGCAGTGGGTTGATGATGACTCAGACCACCAACAACGTTTTTAACCAGTCGCTGTACAAGTCAGTCACTCCCTCCAGCCTGTTCTCCTGGCAGAGGGTCCGGCTAGCCCACGCCCTCGCACACACTGGCAAAGAGTGGGCTGAGATATTCTCCCGCTACAACTCTGGGACGTATAATAACCAGTACATGGTAGTGGATGTGAGTAAAGTGTCCCTGGGCTCGAGACTCGACGATGGTGCTCTGACCATAGTGGAGCAGATCCCAGGACTGGTGGAATATTCAGATCAAACGGAGGCTCTGCGCTTCGGTTACTGGCCGTCCTACAATGTGCCGTTCCACCAGAGCATCTACACCCTGAGCGGTTACAAGGAGATGTGGACGGAGTATGGAGAGGATTACTCCTACGAACTCTGTCCTCGAGCCAAGATCTTCCGCCGGGATCAGGCGTCCGTCACTGATCTGCCGTCACTCAAACACATCATGAGATACAACGACTATAAGAAAGATCCCTACTCAAAGGGTGACCCCTGCAAGTCCATCTGCTGTCGCGGCGATCTGCGGGAGTCCAACCCCATTCCTGAAGGATGTTACGACACCAAGGTGACTGACCTGCGTATGGCTCAGCAGTTTGTGTCCGAGGCTCTGAATGGTCCGAGCACAGAAGGCGGCCTTCCTCCTTTCACCTGGGATGCATTTAACAGTACGACGCACCAGGGTCTGCCGCGCCTCTATAACTACACGTTCGTCACCATGCACCCGGTGCTGTTCACTCCCTGAGCCGCCTACGTAGGGCAGGAAGTGAGCGACGAGCAGAGCCTCAGGAACAGTCTGTTTTACTATGTGTCCTGCTCTACAACTGTTTTATCCTTCTGCAATTAAAAGAGCCTGTGAAATATTgtgagtgcttgtgtgtgcgttAGTTATTGTTCAATCTGTTGGTTTTGGTCTGGTTTGAGGAtacatgtgtgtttatgctggataaattaacactgtgtgttcAGATGATTGTTGTAAACATATCACAGCTGCAATTCTGACCAAAGTTAAACTTGTATGTCGTAACATCGATCAGTAAAGACTCAATGTTTAAATACACTAACTGGTGATTTTCTTTAGTATTTCCTCCCTTTTTAACTAAAGTAGCTTACAAAAGAAATGTCAGAATACAATCTAAACACGGAACTGAAAACTTAGGAGGTTAATGATTTGGTTTTGGAAGTCATGGAATTTGATAGGATTTGATTTCTATGGATCACGCATCCATAACATCAGCATTTCCTCAGatttgttggtaaattactaagaaaagactAAAATTGCACTTAGCGTTGAACTCAGCTATCTTAAATGTATGATTTCCCCAGAATTCCCCAAAACTCCCACTTCGCCATACCGTAACTCTCCAGTTCagagatttctgtaaagctgctttgtgaaatgtccattgtttaaaaagtgctatataaataaaattgaactgaaatcgATGGGATTTGATGGGATTTAAACTCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472206 lncRNA downstream 105628 169832 ~ 193133 (-) True G398140
TU472201 lncRNA downstream 190986 107329 ~ 107775 (-) True G398135
XR_004577543.1 lncRNA upstream 104230 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 284883 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 332167 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 531701 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 537510 847745 ~ 848753 (-) True G398394
XM_034301547.1 mRNA downstream 11624 146928 ~ 287137 (-) True LOC117596420
XM_034301546.1 mRNA downstream 109578 146928 ~ 189183 (-) False LOC117596420
XM_034301549.1 mRNA downstream 181994 79388 ~ 116767 (-) False LOC117596421
XM_034301553.1 mRNA upstream 2173 312408 ~ 324714 (-) True pick1
XM_034301536.1 mRNA upstream 18626 328861 ~ 339349 (-) False LOC113525084
XM_034301537.1 mRNA upstream 18626 328861 ~ 339056 (-) True LOC113525084
XM_034301539.1 mRNA upstream 18626 328861 ~ 339039 (-) False LOC113525084
XM_026911527.2 mRNA upstream 30836 341071 ~ 350569 (-) False LOC113525087
trnar-ccu_18 other upstream 348 310583 ~ 310655 (-) True trnar-ccu_18
TU472228 other upstream 9499 319734 ~ 325545 (-) False pick1
TU472265 other upstream 164331 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 430008 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 575467 885702 ~ 890280 (-) True LOC117596444

Expression Profile