RNA id: XM_034301571.1


Basic Information

Item Value
RNA id XM_034301571.1
length 4714
RNA type mRNA
GC content 0.49
exon number 17
gene id tent4a
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6529180 ~ 6554991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaggatatgAAGacaaactttgtgtgtgtgtgtgtgtgtgtgctttaaaaaTGCTCGTGGTTGGTGTGGGACTCCTCAGGCTTGTTAAATGGGAGTGATGGGAGGTCGCCATATTGGATCCACTGTCTCACAGGCCGAGAGGAACAAACAGACCCCTGATTGGTCCTCAGTTTTCGGCTCTTCGTTATTGAGCtacatgttgtttttaatgtaacCGTGTGTCCTGGTTAAACCGCTCTCGGTCTGGAGGACGCTATAGGAGGACCCAGGACGGCTGGGTGTGTTTTATCCCGGGTGGATAagctagctaagctaagctaagctagtGGAATTTGAATGGATCCGAGGGTCGCCTGGATTCAGCCGGAACAGAAAGGACCTGCTAATGCGTTATGGATGCATGTGTGGGAAACGTCTCAGGGAATCCGGACTAACGCGGCGCACCATCACCGCCAGCAGCTGAGCGAGCTGTGTGTCACCGCTGGCTTCTGCGACGTGTGTAAAAATCAAGGGAAAGATGTGTGCAGTGAGTCTGGGTGTTCATCCAGCacccaccatcaccaccaccaccatcctcctcctcctcctcttcctcctgcttcttcttctgcttcttcttcctcatcatcatcttcttcttctcaccAGAGCAATGCAAACAGCACTAATGTCCGGAGCGCCTTCGCGACATTAtcgattaataataataacaacgtTAGCGCCGCGACACCTCCTCTGAACGCAGCCGACATGGCTCCCACTGAGAAGGGCTCCCGGTCTCCCCCGGACCCGGGCACGGACAGCTCCTACCCGGATTCCTCTTCCGCCATAAGGGCTAACGAGACCAACAAAAACCGCTTGTGTTTCAGTTTCAGCGAACTGAACAACGTCAACCAAAATCACCTTCATaatcattatcaccatcatcatcatcaccaccatcaccaacatTCGCGATATTTCCATCAGGAACAGCAGCCGTATTTCCAGCAGAACTGCATGAAGCGCTACCCGTTCAACCCGGGATTTAACAACCACAACAATCACCTCCACCATCACCCGGGAcggaggaaaaatgaaaataaagcgAGCACATACGGGATAAATTATCTTCTCTCCAACTGGACTAACGGCAATCATGTCAGTCCCGTTACACTGTGGAAAACCAGGACGTACAGCCCCGGACTGAACGGGCTTCATGAGGAGATTATAGACTTCTACAACTTCATGTCCCCTCGACCCGAAGAGGCCACCATGAGGCAAGAGGTAGTCGACCGAATCGAGTCAGTCATCAAGGAGCTGTGGCCAAGTGCTGACGTTCAGATATTCGGCAGCTTTAGCACTGGACTCTACCTCCCAACCAGTGACATTGACTTGGTGGTGTTTGGGAAATGGGACAGACCTCCCCTACAGCAGTTGGAACAGGCCCTCCGGAAGAATAACGTGGCCGAGCCATTCTCTATCAAAGTACTTGACAAAGCTACGGTACCAATTATCAAATTGACCGATCAGGAAACAGAGGTCAAAGTGGACATCAGTTTCAACGTGGAGACTGGAGTCAAAGCTGCCCGCTTCATCAAGGATTATGTGAAGAAGTATACCGTGCTGCCTTACTTGATCTTCGTGCTGAAGCAGTTCCTCCTGCAGAGGGATCTGAACGAGGTCTTTACTGGAGGCATCAGCTCCTACAGCCTCATCCTGATGGTCATCAGTTTCCTGCAGCTCCACCCCCGAATCGACGCCAGAACTCCCAACACGAACCTTGGTGTTCTGCTCATCGAGTTCTTCGAGCTGTACGGCCGCCATTTTAACTACCTGAAAACAGGCATCAGGATAAAGAACGGCGGTGCCTACATGGCCAAAGAGGACATCATGAAAGCCATGAGCAACGGCTACAGGCCGTCCATGCTCTGCATCGAGGACCCTCTTCTTCCAGGTAATGATGTAGGCAGGAGCTCATACGGAGCCATGCAGGTGAAACATGTGTTTGACTATGCCTACATCGTCCTCAGCCATGCAGTGTCGCCTCTCGCAAATTCCTACCCCAACAAGGACAGCGACAGCACTTTGGGACGCATCATTAAAGTCACCCAGGAAGTGATCGACTACAGGGAGTGGATCGTTAACAAGTGGGGAAGCAAGCAAACCGAGAGGAATAACGGTCCTGCTCATAAAGACTCGGTGGAGCAGGCAGACTCGAGCGCTTTGCTCAGTGTTGGAGTGGAGGAGCAGCAGCAACTCCAGAGGGACTCTGTGTCTCCTAACAGCGCTGACTCTCCCATGTCTCTGTCCAGCCCTAAGCAGCACTCATCAGCTTCCTCTCTGTCAGGCAGCGACATCGACTCTGACTGCACGCCGTGTGCAGCTCCAGCAGTGCCCTCCTACCCTCTGCAGACGCTGGCACTGGGCACGCTGCCCCTGAGCTGCAGATGGGCACGAGCAAGGCCAACCTCACCATGCCACTCACAATGCCTGCTGCCAACCAGACGAGAGTTTCAATGCCCGGGAGTCTTCCTCTCCACATTTTACCTggcagacagCAGGCTGGTCCCAAGAGCTTCCACAACCCGGCTTTACCACACGGCCACATGCAGTACAACCGCAACACGTGGCGCCATAAGAAAAGGGACAGTCTACCAGCCAGCGTCAGTAGATAAACACAGCATACTCCTCCTCCCTACCTCCACCACCTCCTTCATCTCCCTCCCCCCTGCTCCTCccgctcctcctcttcctcctcttgtCATAAAACGATGAAAACTCGACGAGGCCTCCTGCTGGTGGGGCGCAAGCCGAGAGACCAGCAGTTTCTGCCGCAGCTCCTCACTCAGTAGCTGCGCTAACGGTGGTGCTACCTTTACTCTCCCACTCCATCCGTGCACGTGTGTGAATTTCAGAAACTCGACCCCTGAGGATGCCTCAGATCTGTTTGATGATCTACACCATGACTTCTGCTCACAATGGAAacgtttttgttattgttgcttTTCCTGTGCATGACTTCCCTTTTCacttgagggtttttttttttttccctaatggGACACCATACACAGACGCTAGATTCAGCAGCTTATCAGTATCATAATAACAGGGGTAAggaattgtgtttgtgtatttttttttcactgtgtgtgtgcaagcaaTCACAAATGTTTGAGTGGATGACACAGAGTGGGTTATTTGTGCAATAActtcttattttctcttttgttcaCTTTAGATGAGaactattatttaattatgcatccagatgtttttttttttttaatcgcttttattttttatagagtttttaatttctgtaaaattaCACACTTGCCCATATTCGGATTCACAAACTCTCTAGACATTAAGCTTTATTTGAGTAATTTAGGAGGCGATGAATCCGTCATCGCCTCACGCCTGACCCTTACCACTGAGTGGGACGGGGCGCTGCGCTCAGATGAgccgtgtgcgtgtgtgcgcgtgtgcgcgcgtgtgtgtgtgttgaagaaTTATTTTAACAGTCTGTCTGCAGGTGGCACCATTTCCTCATTTGTTTCCAGATTTTCTCAGCGCTCTcgactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatgagagtGAATGGGTGTATATCCTCGAACATGGGTCTGTCTTGGCCGTAGCTCCGTTTACATTAGAGCTACGCTGCATGACAGCCAAAGAAGCCTATATTCCAGCACTCGGACCTCCATGTTaggctgtgcgtgtgtgtgtgcgagtgtgtgtttccCTTTTAGATTGCTCTAGGTGTAAGTAATTATGGGAGCCTGAGAAGCTGAAATGAACATGCAGCTGAGAGACGGGTCCAAAGCGCCCATGTTGGACTCCCTGAGCACTTGGTTGGCACCCAAATCAAACGAAAAGGGACAAGAAAGGGAACTTACTCTGATTCCTTTCTGGAATCTTTATGTGCATTTCCAGTGTTACAGGCATACAGGTTATTGTAACTATGCAAATGGAGCTTTGAATCCTTCTTCGTTTGACAACCACATCTTGAAGCCAGAGAGGAAAGACGAGAAAGAGTCTGAGTAAAACCAGGGCACTTCAGATTAGCAGGCTAACCAAGTTACCCTTTTTAGTGTGAAAGGAGCCCTCCACCATAATGAGATTAACACAAAGGCCTATGAGCAGGCAGGAGAAGGTCAGGTTGCAGATGAGTAAGGATGAAGGAAGTTCTTCACTGCCGTATTAACGAGAGTCACAGAGCAAATGATATCAACAATAGGATTAGTGGAATAAGACAAGGGAGAGAAGAGGTCTACTAAAATCCCTCGGAGCACCACTAGAGGAAATGAACTCCAGGAGACCTAAAGGTGAACAGTGCAAATAGAAGTGGACCGAGCACtcagccttgtgggacaccagtgaaAAGACTGCATGAAGTAGATGAGTTTTCCCTCCATATCACCTGATATAACTGTCCCTCAAGATAAGAAACCACTGCCATGCTCTACCACTAATTCCAAGCCCCAAAAGGATGGAATGACCATTTCAAAAGGTGGAGTGTCTCTTTGTGTAGTCACCTGGCAAAACTATGACTGATGAGCTGCATgagtctacagtctgggctagaaagaaatcagctccaGCCTTGCTTCTCCATACCATCTGATGTATTTTTCCTACAACCATTGGTGGAGCTGTTGGACTG

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404449.2 lncRNA downstream 92106 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA downstream 92152 6435540 ~ 6437028 (-) False LOC113543850
TU476320 lncRNA downstream 123302 6405306 ~ 6405878 (-) True G401403
TU476302 lncRNA downstream 169203 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 279144 6247456 ~ 6250036 (-) True G401259
TU476428 lncRNA upstream 11046 6566037 ~ 6567293 (-) True G401482
XR_004577578.1 lncRNA upstream 24037 6579028 ~ 6581192 (-) True LOC117596453
TU476432 lncRNA upstream 30862 6585853 ~ 6586574 (-) True G401486
TU476437 lncRNA upstream 39717 6594708 ~ 6594940 (-) True G401491
TU476481 lncRNA upstream 187066 6742057 ~ 6742274 (-) True G401526
XM_026942257.2 mRNA downstream 8 6470202 ~ 6529172 (-) True adcy2b
XM_034301660.1 mRNA downstream 68023 6453520 ~ 6461157 (-) True si:ch211-152p11.4
XM_026942425.2 mRNA downstream 95341 6429098 ~ 6433839 (-) True c29h6orf47
XM_026942448.2 mRNA downstream 106354 6406106 ~ 6422826 (-) False vars2
XM_026942447.2 mRNA downstream 106354 6406106 ~ 6422826 (-) True vars2
XM_026942444.2 mRNA upstream 962 6555953 ~ 6563632 (-) True srd5a1
XM_026942124.2 mRNA upstream 43295 6598286 ~ 6610939 (-) True ube2ql1
XM_026942343.2 mRNA upstream 124318 6679309 ~ 6683495 (-) True irx1b
XM_026942327.2 mRNA upstream 187731 6742722 ~ 6745462 (-) True ndufs6
XM_026942374.2 mRNA upstream 220988 6775979 ~ 6780923 (-) True nrsn1l
XR_003404453.2 other downstream 93132 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 154690 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 353920 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 939433 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1520719 4961102 ~ 5008461 (-) False sept7a
TU476702 other upstream 706349 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2593520 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2672404 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2821935 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 2832011 9387002 ~ 9416207 (-) False triqk

Expression Profile