RNA id: XM_034301601.1


Basic Information

Item Value
RNA id XM_034301601.1
length 4176
RNA type mRNA
GC content 0.43
exon number 16
gene id igf2bp3
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14016688 ~ 14046043 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAAAGCGCTCCGTTCTGTGAACAGGCTATACACACAGTCAGATGAGTGTAAAATCAGTTTCAATTCAAACTCTTGGCAAATCCGTTTCGCTGTGTGTATTTTGAATGCTCTAACTCGAGCAAGTCGTGTTCACCCTCTCTTCGCGTTCATATAGGCCTATTTTCCTTGGTACTTGAAGTAATTTCGGATATTgAAAAGTAGAACTTCACGGAAAACTTCTAGAGGTAGAGCATTCAGTCCCCAAGCGTCAAAGGAGCTGTAAACTGCAGATCAGGAATATCCCACCACACATGCAATGGGAGGTGTTGGATGGATTATTAGCTCAATATGGCACAGTGGAGAGTTGTGAACAAGtCAACACGGACACGGAGACAGCCGTAGTGAACGTGCGTTACGCCGTTAAGGAGCAGGCCAGACAAGCAGTTGAGAAACTGAATGGTTTCATGATGGAAAACTATGCGTTGAAGGTGTGCTACATACCAGATGAGACTGTGCTCTCTGAACCCCCGGCAGTGGGCAGCAGGAGAGGAGGGGCACCACGTGGCCCACCACGCCAGGCCTCACCCTCTTTGGGTACTCGCCCTAAGCTGCAGTCTGACATTCCGCTGCGCATGCTCGTGCCCACCCAGTTTGTGGGTGCCATCATTGGCAAAGAGGGTGCTACCATTCGCAATATtaccaaacaaacacactcaaaAATTGATATCCATCGTAAGGAAAATGCAGGAGCAGCAGAGAAACCCATAACAGTCCATTCAACTCCAGAGGGATGTAGCTCTGCCTGCAGGAACATCATGGAGATCATGCAGAAGGAGGCCTTAGACACAAAAATCTCTGAAGAGATTCCTCTGAAGATTTTGGCTCATAATAACTTTGTGGGGCGCCTGATTGGAAAAGAGGGCcgcaatttgaaaaaaattgaacaaGACACTGGGACCAAAATCACCATCTCACCTCTCCAGGACCTGACTCTGTATAACCCAGAGCGAACAATCACAGTGAAGGGCTCAATAGAGGCATGTGCCAGAGCTGAAGAGGAGGTCATGAAGAAAATCAGAGAGGCCTATGAGAATGATGTAGCTGCCATGAATCTCCAATCTAATCTGATTCCTGGCTTGAATTTGAATGCTCTGGGTCTTTTCCCGGGTGGGACAACAGGAGCAGTATCCCCCTCTATGGTGCCAGGACCCTTATCTGGAGCACAAGCTGGATACCCATCTTTTGGGTGCAGCGTGTTTCGGAGTGAGGTGCCGTTTTTGTCCTCCAGTGGTAGCCCATCCCTTTCTCAGCAGCCTGAGTCAGAGACAGTGCATCTCTTTATCCCAGCACTGGCAGTGGGTGCCATCATTGGGAAGCAGGGCCAGCATATAAAGCAGCTCAGCCGTTTTGCTGGTGCGTCAATAAAAATTGCTCCAGCTGATGGGATGGATGCCAAGCAGAGGATGGTCATTATTTCAGGACCACCAGAAGCCCAGTTCAAGGCTCAGGGACGTATCTTTGGAAAGCTGAAGGAAGAGAACTTTTTTGGGCCAAAGGAGGAGGTCAAACTAGAAGCTCACATTAAAGTGCCATCATTTGCTGCTGGAAGGGTCATTGGTAAAGGGGGCAAAACGGTGAATGAACTACAGAACCTAACTAGTGCAGAGGTGGTCGTCCCCCGCGATCAGACACCGGATGAAAATGACCAAGTGGTAGTGAAGATTACTGGCCACTTTTATGCAAGCCAGCTGGCTCAGCGAAAGATTCAGGAGATCCTCTCACAGGTGAGGCGGCAGCAGCCCAAATCCTCGCCTACTGGGGCTCCAATACCACGGAGGAAATGATTCACCAAGTGCATGGTGATGGACAAGAGAGCAGACATGGGATGTGCCCATCTCTGGAGTTGACCCCACCTACTCTTACACCCCACCCACCTCCCAGATTTTCTCTGAGAATGTTTTGTTCTAAACATGAGAAAACACGGCTATGAAAACTAGTCTCCCCTTCACTGCCGTAGTGTGGTAACTGCACAACGCTCTCTATatttttcctcttgtttttcCCTGTTAACgctacttttttgtttattggttttGAGTTTTTCATCTAAAAGTCAAGGCATTGCTCTCCTAGCCTGGCTAGGGGTGGGGTCCTGAAAGCTCTGGGTATGAGATGGGACTAGAAGTGGTGTGGTCAGAAATATTTTGTCCTAGTATTGCTAATGGCATTTTATAAATTCAGATgcattttataaagaaaataattatatatagatACCAGATGAAATATGAAAGGTGGCAGAACAACACTGCCACTAACGATTACAGGAAGTGTTGATTGGTGTTAGCCAGGAAACCAAGTTAATATGCATTTTTACTGATCTACCTCAGGCTAGAGTACCTCagaaaaaagaagtaaatgatatatggaaaaaaatgttcctttcttttttattttgctttgtgGTATTTTGTATACTTTATAAAACCTAAATAGTTcttgaacatttttatttttttaagaaaaagtaaaagtcTGCTGTTAACACAAGAACCTTGAGCCCCACGTTTATGATGCAGACAGCTAATAACTGTACATAAGAATGTCTGCACGTAGGTAGGTGTGAGGTTTGAGGGCTTGCTGTTTGCAGATAGGAATATTGTAAAGCGCCTCAGTGTTGCCGAGGAGCCACCATCTTCTGGAAACATCAAAAAACAGGATATAGATGCCGAAAAATGCTGACCATACATATTGCAGCAATGCCATTTAGTTTAGCAATTATAACATTTTGGCAGGTACATTTTCCCCACAAACATCAAGTTAGCATTCAGGGATTAGCTTCAGCGTTCAGGGATCGTGTTAAGTcctgctgtaacacactgatGCGCTTTCATCAGATTATCACAGCCCAGCCCTTTGTGGTacttgttcatttttcttttcccagCCTTTATTTTTGACATTATTTGTGGGCTGGCTTCCATCACACCAGGCTTTTCCACACTGCAGACATCTGTGTTGAGTGTCCGTCACTGCATGGTGAGGGTTGGGGGAGTCactgtttcaaatgtttttgatgTTACAATACTAATGGATGCTTCTTTATAGCCAGCAGTAATGTAGAAATGgatgtgaactttttttttttttttttttttttttttttttttaattcaaaattagaaaagcaagaaaaaaaaaaaataatgaatcttTTAGAAGAAATATGGAGGAAAAactgagtttcttttttttttttcatgcgaATGTAAATATGATTGTGGTGAAAGAGCATATTCATGCTTCCACACTAGTAGTAATGTCTACCTCAGCTGAATCAAGGGTGGGTGGCGTTAAAGCTTGTGCCTCTAGCTACCTTGTTAAAAATCTGTGCCGATACATTGAGCCCCTCGTGGGCACTCGTGTTCTGCTTTGGCTCAGTGTGTCGTGCCTTGTGTTCACAGGagtgcacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtcgtCCCCCCCCCCGCCTTCCTCTTACACTATTGTTGATCTACCTCTTGGACACATTTGAATTAGAGGCATATTACTATTTGTTAGAATTTAGGGTCAATTCTCAGTTCCTTTCCCtaccagaaaaaaatgaagatgttaaaaaaaaaaatcacgtatGGTTATATTTGACAAATGAgtgatttttaatgtattttctttttgcctGCATTGTGATCTGATTGCTGATTTAAATCCTCAATGTGttgctttttctgtttcttagtTTTGGTGGTGTGGCTTCCATGTATTGGGCTTTATTTCATGCATAGATATTATATCAAGCCATTGTTCATTTGGGATTTGATCAATAACCCagaagtttttgttttgattttgtttgttttctttaaaatggaCTCGCCTTCTGATTTATGAACTACAAATGAGTCAAGTTTTCCCTCAATACTTATGTAAAATGATACTACCATTTATTCTAATATACGATTTCTTGGCTGTGTTGTGTGGTGAGTCATGTTTCAGTGGGAATGTGATGTGGAGTTTACAGAAAGTGGTCCAATTTCAGCATGAGCTGCAACCCCTCTGACCGTGCTTGTGCCCTCACACACTTCCACTTGTCAAATGCCTCTgagaaaatggaataaaaaatgtcatgttgGCTCCTAGAAA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480986 lncRNA downstream 144260 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA downstream 146933 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA downstream 176855 13815898 ~ 13839833 (-) True G405420
TU480985 lncRNA downstream 201796 13808483 ~ 13814892 (-) True G405419
TU480934 lncRNA downstream 280940 13735536 ~ 13735748 (-) True G405386
TU481157 lncRNA upstream 31425 14076442 ~ 14077150 (-) True G405575
XR_004577551.1 lncRNA upstream 138469 14183486 ~ 14191755 (-) True LOC117596429
TU481288 lncRNA upstream 211507 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA upstream 259922 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA upstream 268722 14313739 ~ 14314834 (-) True G405701
XM_034301580.1 mRNA downstream 16023 13976922 ~ 14000665 (-) False oxnad1
XM_026928262.2 mRNA downstream 16028 13976922 ~ 14000660 (-) False oxnad1
XM_026928259.2 mRNA downstream 17011 13976922 ~ 13999677 (-) False oxnad1
XM_034301581.1 mRNA downstream 17021 13925835 ~ 13999667 (-) False oxnad1
XM_026928261.2 mRNA downstream 17021 13969596 ~ 13999667 (-) True oxnad1
XM_026928422.2 mRNA upstream 22300 14067317 ~ 14074175 (-) False ccdc126
XM_034301712.1 mRNA upstream 22300 14067317 ~ 14074175 (-) False ccdc126
XM_034301713.1 mRNA upstream 22300 14067317 ~ 14074143 (-) True ccdc126
XM_026928309.2 mRNA upstream 36355 14081372 ~ 14083846 (-) False npy
XM_034301504.1 mRNA upstream 94927 14139944 ~ 14168596 (-) False mpp6b
TU480965 other downstream 255133 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 255172 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 458068 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 623953 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 875573 13140694 ~ 13141115 (-) True G404999
XR_004577571.1 other upstream 36355 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 69602 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 498200 14543217 ~ 14543289 (-) True trnat-ugu_14
trnat-ugu_15 other upstream 501089 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 922459 14967476 ~ 15013988 (-) True G405961

Expression Profile