RNA id: XM_034301603.1


Basic Information

Item Value
RNA id XM_034301603.1
length 3385
RNA type mRNA
GC content 0.54
exon number 22
gene id bag6l
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7844463 ~ 7858199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATTCCCAGCTGAATGCCACAACGATGTCGTAACCACAactcgtttttgtttttttcgtgAGTAACGAGTTCAGTGGTTGTATTTACGACAGGATGTGTGTTCAGATGCTTTTGGTGTCAAGAAATGGACGATgGGTCCATGGAGGAGTCTGGAGATATTAATGTGACTGTTAAAACTCTGGACTCTCAGAGCAGGAGCTACACAGTCCGAGGAGAGTGGACGGTGCAGGAGTTTAAGGAGCACATTGCCTCTTCGGTTGAGATCCCGGTGGATAAACAGAGGCTGATCTACCAGGGCAGGGTGCTGCAGGATGACAGGACGCTGACTGAATACAatGTTGATGGGAAGGTCATTCATCTCGTCGAGCGGGCTCCTCCTCAAACCACACAGTCTGGAGGTGGAGGAGATGCTGTGTCTGGCTcatcaggaggaggaggagagggatcATCTGGCTCGACTCACTCCTCTACCTCCACTTCCCAAGGAGCACCGCATGACCGCAACGGTAACAGCTACGTCATGCTGGGCACCTTTAACCTCCCGGTGAACATCCTGGACCCCCAGCAGATTCAGATGTCTGTGCAGCAGATGATGGCTGGTGTTGGGGATGGAGGGCGAAATGCCAGAGTCAACACGAGCACTGGGAGCAATGGATCTGTGGATGTGCATATTAACTTGGACCAGTCAACTCAGAGTGAACCGAGGATAAGGCTCCAGTTGGCGGAAAACTTGTTGCGAGAGACTCAGTCCTTAATTCACAGACTGGAGGGTCAAGCGAGTGAAGGATCCACCCAGCAGGCGCCTGCAGattcctcctcttcatcagcACAACCAATGGACActtctccacctccacctcctgcctcttcttcttcttcctccacctccacacagacagaaggcCCTCCTCACTCTGGACCAAATCACCCAAGCCCATCAGAGCTGATGGAGGTGCTCTCAGAAGTGCGGAGGGTGGAGGAAAGGCTCCGCCCCTTCATGGAGAGAACTCACTCCATCCTGGGAGCAGCCAGTTCTGCAGATTACAACAACAATACACAAGAGCGTGATGAAGACCAGCGCACGCTCAATGTGGTTGGCGAGTCCCTTCGACTTCTAGGCAACACCTTGGTTGCTTTGAGTGATCTTCGGTGCAACCTGGCTGCACAGCCTCCCCGCCACCTACACGTGGTTCGGCCCATAACCCACTACACATCACCTGTTCTGCTGCAGAGTGGTCTGCCCCATATACCAATACCACAGATGAACATCGGAACCACTGTTACAGTGACCTCTAATGGCAGACAGGCAGGTGAAGGTCAGCCTCAGCCATCTCAACCATCTGGCCAACCAGAGGAGCAGGATCAGGCACAGACATCATCCTCTCAACCAAATGGAGCCAATCAGACACCTGGTCAGGGGACGCCTCGTGTAATCAGAATCACCCACCAAACCATGGAGCCTGTGGTGATGATGCAGATGAACCTGGATGATTCAGGCAGTGGAGCTCAGGCACCAGGCCAACAGAATCCCAGCGCTGCTGGACAGACTGGCTCCACCCCACCCATGCACATCCCTGGCTTGCCTCCTGAATTCATGCAGGCCATCGTGCATCAGATCTCCCAGCAGGCTGCTGCAATggccactgcagcctcagctggCCACCACGGACATCAGTCAGGCACTCCTGCACCAAACGCCCCAAATGGAGAAGCACCAGCTGTTCCTCCACCTCCACAAGCCAGAGTCGTCATCACCAGACCCGCCTTTACCCCACGGATTCCTCAGCCTGCTGGCACCAGGGCAGCTACCATTAACCTGCGTGCATCGGTGCCACCCACCACCAGCCAACAGCCTGCACAGGGCCCTATGGCTAATTCTCCTCTCACTCAGATGGTGAGTGGTTTGGTCGGGCAGCTGCTAATGCCGATGCACACAGGTGATCAAACATCCACTGGCTCTTCATCCCATTCGTTCTCCTTCTctacctcttcctcctcctcctcctcctcaactGCCCCTTCCTCATCAGCCAATACCTCTACACATACCTCTTCTAACACTACCAGCACAGCCCCCACGGGCCAGTCACAGAACGAGGGTCCGGAGGGGAACTTGCCCCACCTGCTGGGCTCTCTCTTGGGTGGAGCTGCTGGAGTAGGTGGGAGTGTCTCtggaggctctccttccattaCTGTGACAATGCCTGGTGTGCCTACCTTCATCCAGGGCATGTCTGAGTTTATCCAGGCAAATCAGCCTGTGTTTCCTCCTCCCCCGAGCCAGCAGCCTCCGCCTGCTTCCTCTGCTCCATCTGGCCCGTCAGCCACTCCTCTGAACCCTCCTCATCCTCCCAGCAGAGGAGGGGAGACGCTGAGCCCGGAGCTGTTCACAGGCATCGTGCAGGGTGTGCTGTCCACCATGATGGGTTCTCTGGGGGCCGGTCAGGGTAACAGCGAGAGCATTGCCCAATTCATTCAGAGACTTTCTCAGACCAGCAATCTCTTCACTCCTGGAGCTGGAGATGctgtggGTTTCTTTGGAGACTTGCTGTCTCTGGTGTGTCAGAGTTTCTCTATGGTGGATATGGTGGTGTTGCTGCACGGCAACCCTCAGCCTCTGAGTCGTATCCAGCCCGAACTCGCTACCTTCTTCAATGAGCACTATCTCAATGGACGAGAGCCTACTGATGCCAATATTGCTACCGCTGCTGAAGATCTCATCAATGGACTGGAGGAGTATATTGCTGAGAGTTTTTCCACAGTCACAGTTCGAGAAGGAGTAGACATCATCCAAACAAACATGTCCTTCCTGAGACAGCAGTTCACCCGCATGGCAACGCATATACTCCGCTGTACAGATCACATGTTTGGTCCTCGCTTGCTGTTTCTTTGCACTCAGGGTCTGTTTGAGTGTCTGGCTCTCAACCTGTACTGTTtaagaggagagcagagggcgCTTACAGCAGTCATCAACCATCGCATTAGAAGGATGTCTGCAGAAGTAAATCCCAGTCTAGTGAACTGGCTGACCAGTATGATGTCCATGAGACTGCATGTGATCCTGGACCATAACCCAGTTACAGAGGACCAAATCCAGCATTACGTTCTCTATACACAGCCTGAGTCTGATGTGAGAGTAGAGTCGAACACAGGAGGCAGTCCAGCAGACGGAGAACCAGAATGTGGAGATGTCTCCAGCACCTGCCACCACTGCTGAAGAGGCCATGGCACCTTCAGGAGAGAGAACTGACTCCAGACAGCTAGCTCCAGATCTCACTCCTCTTCACAGGCCATCCTCAGTGAGCACACGAGAACCTGCTGGAATGGCAACTAATGGGAGGGAGGAGTCAGGAGTGGAGGCGGAGCCATGGGCAGCAGCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476858 lncRNA downstream 16800 7815999 ~ 7827663 (-) True G401835
TU476828 lncRNA downstream 102706 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 105219 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 106021 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 136272 7707862 ~ 7708191 (-) True G401815
TU476884 lncRNA upstream 11204 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 463957 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 464320 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 562188 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA upstream 575645 8433844 ~ 8436904 (-) True G402122
XM_026942276.2 mRNA downstream 24752 7804783 ~ 7819711 (-) False abcf1
XM_026942275.2 mRNA downstream 24753 7804783 ~ 7819710 (-) True abcf1
XM_026942288.2 mRNA downstream 45798 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA downstream 45798 7788909 ~ 7798665 (-) False ppp1r10
XM_026942289.2 mRNA downstream 45798 7788909 ~ 7798665 (-) True ppp1r10
XM_026942388.2 mRNA upstream 12137 7870336 ~ 7887855 (-) True tmem64
XM_034301795.1 mRNA upstream 69246 7927445 ~ 7938210 (-) True pip4p2
XM_026942220.2 mRNA upstream 536324 8394523 ~ 8417397 (-) True smap2
XM_026942222.2 mRNA upstream 536324 8394523 ~ 8417391 (-) False smap2
XM_026942221.2 mRNA upstream 536324 8394523 ~ 8417383 (-) False smap2
TU476702 other downstream 567819 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1408415 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1469973 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1669203 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2254716 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1290312 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1369196 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1518727 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1528803 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2645090 10503289 ~ 10503361 (-) True LOC117596479