RNA id: XM_034301609.1


Basic Information

Item Value
RNA id XM_034301609.1
length 4924
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113523961
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2914034 ~ 3079229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAATTTGATCCtaaacagggagagaaagaacaagaaaagaGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGCTCTACACCAACCACAAAACATCCAGCAAACAGTGCAGAAAGTGATGCCTTATAATTATGAAGAACAGAGTGATTTCCTGCTGGATCTGTGCTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCAGCTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGGTGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTGATTCAGACTCTGCATCCATCCGGTTTTTCCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTACTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGATGAGTTTGATGAATTCCAAGAAGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGATTTTCACTTTACACATGGAGAGAAAGAACGAGAAAAGAGATGGAGAACATTTAAACTGGATTTGTGTCTGCAAGCAGTTCTACACCAACCACAAAACATCCAGCAAACGGTGCAGAAAGTGATCCCTTATAATTATGAAGAACAGAGTGATTTGCTGCTGGATCTGTACTCACGTGTGAAGCAGTATGAGAGTAACACAGGCAGGAGAGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAatataatTACAGGAAGCAAAAACATGTGGAGTTCCTGATGAGTCTCCTCCATCACACTACAGAaagtgacagacacacaggggGAAAATCACTGGAGCTGTTAACATCACTGTGCACTCACAGATCTTTTCCTTATGGACAAAACTCCATGTATAACAGTGATTTCCTGCTGGATCTGTGCTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTACATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAATTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTGATTCAGACTCTGCATCCATCCGGTTTTTCCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTACTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGATGAGTTTGATGAATTCCAAGAAGAACAGAGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCAGCTCCTGAAGTCTGGTACATAAATCTCTCAGAGAGAAAAGTCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTAAAGAGTTTTATTCAGGCTCTGCATCCATCCAGTTTTTGCTGAATCTGAGCATCGCAGCAGTCGACTGTCAATCAGATAAAGGAGAGAGTTTTATTGAGCTGCTGGCGTCAGTGTGCAGCTACAGCACATTCCCTTTTGGTGAAGAGGTTCATGGATTCCAAGAAAGACAGAGTGATTTGCTGCTGGATCTGTACTCACATGTGAAGCAGTATGAGAGTAACACAGGCAGGAGTGTCCTTCCAGCATTGCTGCCAGTTTACCAGTCACTTCCTGCAGTCTGGTCCATAAAGCTCTCAGAGAGAAAAGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTGGAGCTGAGAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTCAGATGTGAAGAAAAGTTAATTCCACGTTTAAGTAAAGCAGTTGTTGACTACGCAGAAGATACAGAGCTGGTGAGAGCTTTCTTTGCTGCCATGGACTTCATCTTCATTATAGATTGGGTTTTAACCACTCGTGAGTGCAGGGCTGTGAGGAAAGTGCTGAATCTCTCAGACTCTAAACTCAAACTCACTCTGAAACCCTGGGCCATCTCTCTCCGAGGAGTGAGACTTCTCTTCAGACACATCACACACCTACAGAAACTCTGCCTGAGTGACCGTGTGGTAGGGAGGATGGTCCGAGCATTTCGAGCAGTGAGAGCCGGTGGCTCATTGGTCATTGAGGAGCTCTGTCTGGGCCTTAACAGCATAAAGCCAAAGAAAGAGATCTTCACATTTCTGAGCAGTTTGTCTTCCCTCCTGAACATCTGGACTGTTCACTGTGTGAACCTCACTGAGTGCAGGATGGAGGCTCACTCTCTCATCAGCCTCATGTGTCATCCTGGGAATTTAAATATCAGatTATCTAAAGCGACTCTCCAGCAGTTTACTGATCTGCTGTGTGAGGCGCAGGATGGGGAACTGACCCGCTTTTTCCTGGAGAAGGTGGGAGGTGACCTGACTTCCTGTTCTCTCAGTTGGGAGGAGCTTATCTATCTTCTCCAGCAGCAAGTTTGCCGCATTAGTGTGAACATCAGAAAGAGCAAAATCACATATAAACATGCCAGACAGATTCTTCCTCTACTGTCTGAAATTCAGTTTAAACGATTGAACCCTGGTGTTGTGCTGTCAATCATCAGAGAGATCTATGAGACTGGTTCTGCTCACTGTGTGTCCAGTCTGTTGAGATCAACACACAGCTGTATCAACCTGAACAATACAGAGCTGGACTCTTATCACTGTACTGCGCTGTGCTTCACCCTCCAACACtgcacatctgtctctctgagcCTGCTGTGGACCTCCATACCAGAGGGGGAGCTGGTGAAGATTCTGCCTCTGTTCAACAGAGTTTCTCAGCTCAGtgTTGACAGGCTCCTGTTGCTGAAGTTGCTCCACTGCTGCAGTATCTCTGAGCTCCAGCAGGGGGCAACAGCAGCAGTTGTCTTGGCTCTGCAGAACAGACTGGACTTCTCTTGTAGCACTGGTTTGGATCTGAGCACAGAAACACAGGATAACACTCTGCACCTGACCACTGAGGACTGTAGAGACATCAGCACTGCCATCTGGAAATCTCACCAACTTACAGAGCTCATTCTAGAGGACTGTGAGATGGAGGACACTGGAGTGGACATGTTCTTCCTCATTCTACATACTGTGAGACTGCGCTGTAGTAAACCTTTGTTGCTCCGGTTCCTGGATCTTCTCCATGTGGTGAATGAGTCAGACTGTGTGAGGCGTGTTATGTCCCTCTCCCAGGCtctggatggacagatggacctCAGTGAGACCCCTCTGGACCTCCATGCCTGTAGATCACTAGCGTTGTTTCTGGAATTTTCTGAAGGTCTGTCAGAACTGGACCTCAGCCACTGCCAGCTCGCTCATCACGGCCTGGAGCTGCTGTTCCCACACCTGCATAAAGCAGCTGTCCTGGACCTGAGTCACAATGACATAGATGATCCTCTAGCAGGAAGAATCTACACAGTTGTTTCCAGTAGCAGCAACATACAGACAGTTCGACTCTTCAGTAACAGAATTACTGATATAGAGCGTTTCCGAAAAGACAAGCGATTCGAGATCTGGTGATGACTGTGGACCAGTGTCCTGTTTTCACACTTCTCCCTAAACAGTACAAGGAGTAAAGACTGAAGCATAAACAGTCCTCATTATTATCTTTTCTTAATTctaattttattctattatttatttattggttttgTTATCCTGTccaattattttgaaatttcaTGGATTGTTAATAAGTtatgttaaatgaaaataaaatagacatGTTAGTATTTAAAATCACGTTTTGGGAAGCACCcagaaggaaaggaaacaatatttgttttcttttttctgaatattaatatttttttagctgttacaacattaaacatggaGCTGGACTTCACAATACACATCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473738 lncRNA downstream 11283 2898608 ~ 2902751 (-) True G399348
TU473726 lncRNA downstream 38958 2874842 ~ 2875076 (-) True G399336
TU473722 lncRNA downstream 49098 2864697 ~ 2864936 (-) True G399332
TU473718 lncRNA downstream 53913 2859745 ~ 2860121 (-) True G399328
TU473706 lncRNA downstream 87987 2825832 ~ 2826047 (-) True G399316
TU473993 lncRNA upstream 68070 3147299 ~ 3156012 (-) False LOC113525117
TU473994 lncRNA upstream 68070 3147299 ~ 3155016 (-) False LOC113525117
TU473995 lncRNA upstream 68070 3147299 ~ 3196563 (-) False LOC113525117
TU473997 lncRNA upstream 75446 3154675 ~ 3155016 (-) False LOC113525117
TU474026 lncRNA upstream 88648 3167877 ~ 3168603 (-) True G399532
XM_026910075.2 mRNA downstream 389855 2517791 ~ 2524179 (-) True LOC113523971
XM_026910081.2 mRNA downstream 406893 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA downstream 406894 2498979 ~ 2507140 (-) True cbx2
XM_026910082.2 mRNA downstream 407278 2498979 ~ 2506756 (-) False cbx2
XM_026910059.2 mRNA downstream 511873 2397416 ~ 2402161 (-) True tmem100a
XM_034301457.1 mRNA upstream 5 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_034301633.1 mRNA upstream 39106 3118335 ~ 3295290 (-) False LOC113525116
XM_034301635.1 mRNA upstream 39106 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA upstream 39106 3118335 ~ 3137575 (-) False LOC113525116
XM_034301631.1 mRNA upstream 39106 3118335 ~ 3137575 (-) False LOC113525116
TU473396 other downstream 487428 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 665803 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1032976 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 1049191 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 1322305 1569003 ~ 1591729 (-) False st13
trnay-gua_7 other upstream 90105 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 124061 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 144871 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 185484 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 194611 3273840 ~ 3275955 (-) False G399489

Expression Profile