RNA id: XM_034301632.1


Basic Information

Item Value
RNA id XM_034301632.1
length 4414
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC113525116
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3118335 ~ 3295290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GctggaaaagtaaataaacttCAACACCAGGCAGAAACGGTGATATTAATGTTACACAACGTGGACTTCTGACTAAAAACAGCAGTAAAACTTCACTTCAGTGGAACTGAAATCATCTTCCCTGTAAAGCTGTTGTTTatcagGAGTGTAATTCATTCCAGAGATCAGTGACTTGGCTGTGTGTCCATGAGCTGTCTGTGTATACACTAATATTCAAAAATGGAGAGCCCTGATCTTGATACAGATAATGTGACCCCGCCCTCAAAAAAGCGTAAACTCcagagaaagagatcagactcaccagaacccagctgtgtctccatgaagagtgacATGTCTGTGGATCTTCCTTGGAACTTTAAAAATGGAAACTCCTCATCTGCACACAGTAAACTCCAGATAAAGAGATTATACTCTAGCTGTGTCTCCATGAAGAGTGGCATGTCTGTGGATCTTCCTTGGAACTTTAAAAATGGAAACTCCTCATCTGTAGACAGTAAACTCcagagaaagagatcagactcaccagaacccagctgtgtctccatgaagagtgacATGTCTATGGATCTTCCTTGGAACTTTAAAAATGGAAACTTCTCATCCGTACACAGTAAACTCcagagaaagagatcagactcaccagaacccagctgtgtctCCATGAAGAGTGATACGTCTATGGATCTTCCTTGGAACTTTAAAAATGGAAACTTCTCATCCCCACACAGTAAACTCCAGATAAAGAGATTACACTCTAGCTGTGTCTCCATGAAGAGTGGCATGTCTGTGGATCTTCCTTGGAACTTTAAAAATGGAAACTCCTCATCTGTAGACAGAGTTCTACAGAAGGCAATATACAGAAGAAGAATGAACATCATCGCAGATACAGGACACGACCCAGTATCTGCTGCTGTAAATGAATTCCAGAAAAAGTTCAAATTAAATCTGATGAagaaatttcagtgtttaaatggAGTGATAATAAACCAGGAAAACCGAACACtcctgaatgagatctacacagagctctacatcacagagggagACAGTGGAGATGTCAATAaagaacatgaggtgagacagatcgAGGCAGCATCCAGGAGAACAACAACAGAGGAAACACCAATCAAATACAATGACATCTTTAAGCCCTTATCTGAGCAAGACGAAcccatcagaactgtgctgacgAAGGGAGTCGCTGGCATCGGAAAAACAGTCTccgtgcagaagttcattctggactgggctgaagggaAAGCTAATCAGGACCTCCACCTCATATTTCCACTTCCTTTcagagagctgaatttgatgaaggaCCAAAAACTGAGTCTGATGGATCTCCTTCATGTctgttttaaagaaacaaaagaaacagaaatgtcCGGTCCGGAAAAGgttctgttcatttttgatGGATTGGATGAGTGTCGTTTTCCTCTGGATTTCCAGaccacagtgagtgtgtgtgatgtaaatgaATCAGCGTCAATCCATGTGCTGCTGATAAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACTTCCCGACCAGCAGCAGCTGATCAAATCCCCTCTGAGTATGTCCATCGAGTCacagaggtacgagggttcAAGGACCCACAGAaggaggagtacttcaggaagagactcagtgatcagagcctggccaataacatcatcacacacctgaAGTCATTAAgcagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagagtgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAGAGAAAAGTACTCAAAGAAGCAGGAGAGTGATGAAGAAATGCTTCTCAAACTGGGACAACTGGCTTTTCAGCAGCTGCAGAAAGggaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtgacagaagcagcagtgtactcaggtgtgtgtacgcagatcttcagagaggagtttgggcttcaccagAGTAAAGTGTATAGCTTTGTTCATCTGAGCATTCAGGAGCATCTCGCAGCTCTGTATGTGCACCTGACATTcaggaaggaaaagagaaatgcTCTTGTACAGAGTCGGGTCTTTAAAACAATTTCTGATGTCCACATGAGTGCTGTAGATCAGGCCTTAGAATCTAAGCCTGGACATCTGGATCTTTTCCTTCGCTTTCTTCTGGGTCTCTcgctggagtccaatcagaatcTCCTAGATGCTTTAGTaagacagacaggaagtagCTCTCAGAGCAAAGAGGAAACAGTTGAGTACATTAAGATGATGATCAGAAGGAATCCCCCTgaagagaaatccatcaatctgttccactgtctgaatgaactgggTGACAATTCTCTAGTGGAGGAAATCCAACGCTACCTGAAATctggaaaacaaagaaaactctCTTCTTCACAGTGGTCTGCTCTGGTGTTTGTCTTACTGACTTCAGCACAGGAGCTGGAAGTATTTGACCTGAGTAAATATACCAGTACAGAGCACATAACAGCTTTGGTTCTTCTGAAGGTGATGCCTGTGGTTGCAGCATCCAGAAAGGCAGTcattcaGCATGTAACACTTGAAAAGAAAATCTCTGAAGCTTTGGCGTCTGTACTCGGCTCTGAGTCTGCCAAtttgagagaactggatctgtctgAGAGTAAActaggagaatcaggagtgaagtgtctctctgtgGGACTGGaaaatcctcactgtaaactggagacactgagGTTGGTGTTTTGTCGCTTCTCAagtgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacacctgagagtaCTGGATCTGTCTGATAATAATctaggagactcaggagtgaagtgtctctctgcaggactggagaatcctcactgtaaactggagatactgagGTTGCGTAGGTGTGGTGTCTcggatgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacacctgagagaactgaatctgtaTGGGAATAAActaggagactcaggagtgaagtgtcttTCTGCagtactggagaatcctcattgtatactggagatactgagGTTGCGTAGGTGTGGTGTCTcggatgaaggctgtgctgctctgggttcagctctgagatcaaacccctcacacctgagtGAACTGGAGCTGTCTCAGAATAAActaggagactcaggagtgaagtgtctctctgctgtactggagaatcctcactgtaaactggagatagTGAGgttgtgtgatTGTGGTGTCTcggatgaaggctgtgctgctttggcttcagctctgagatcaaacccctcacacttAAGAGACCTGGATCTGTCTCAGAATAATctaggagactcaggagtgaagtgtctctctgctgtactagagaatcctcactgtaaactggagatactgagGTTGCAGTATTGTGGTGTTTCACATGAAGGGTGTGATGCTCtcgcttcagctctgagatcaaacccctcccacctgagagaactgaatctggaCTTCAATGAAAtaggagactcaggagtgaagctgctctctgctcttAAGGACGATGTTCATTACAAACTACAGGAACTGATctttagGGTGTGAtgaacatctgtgtgtgtgatgaagactCCAGTGTTCCTGCATTTCCACGCTGGGGAATAGAcaacacatttataaacacatcACTCTCTAAGTTTTAACACATTAAACAGTCTCACAGAAGTGGGAAGTGTCATCAGACTGCACACAGTTCTACAATGAGGCTGTACAGGATCCAGACATTAGAACTGAACTGCTGGAATGGAGACACTGTATTGACCATtacacttcagtgtgtgtgattctgaAGTTATTGAGTGCCACAATCAGACCCTGGAGACACAGCAACCCTCCTGCACATTCAACACCTTAGTCAtgctcaatgttttttttttttttttttttttttctccaagttCGGTCCTGCCTTACTTATAGAAGTTtgaatatctaaatatctaagATGGTTTGAATTATTATACCTGGTGGTATTTATGGGatatattgttttttcctgCTCCTAACACAGCTGATCTGATGTTATGAATAGGTTATAGCTTTATAGCttatatattttctgttaaCTGTTGTGGCAGCACATGTTAACTAAAAACACAGTGTATACAACACAAGTGAGTACGTTATACCCCTGGAAAAGGGGAAAGAATTAATCAGTCACACTCCTCATTGCTTCTCCACTGTGAACTTTATGCATAATCTCTCTTGATAACAGTTAACAATAAACAATTGTCCAAAACAG

Function

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473983 lncRNA downstream 48067 3011867 ~ 3070268 (-) True G399494
TU473979 lncRNA downstream 71823 3001698 ~ 3046512 (-) False G399491
TU473974 lncRNA downstream 71823 3041817 ~ 3046512 (-) True G399491
TU473980 lncRNA downstream 82680 3027698 ~ 3035655 (-) False G399492
TU473981 lncRNA downstream 82680 3031407 ~ 3035655 (-) True G399492
TU473993 lncRNA upstream 9726 3147299 ~ 3156012 (-) False LOC113525117
TU473994 lncRNA upstream 9726 3147299 ~ 3155016 (-) False LOC113525117
TU473995 lncRNA upstream 9726 3147299 ~ 3196563 (-) False LOC113525117
TU473997 lncRNA upstream 17102 3154675 ~ 3155016 (-) False LOC113525117
TU474026 lncRNA upstream 30304 3167877 ~ 3168603 (-) True G399532
XM_034301457.1 mRNA downstream 6083 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_034301609.1 mRNA downstream 39106 2914034 ~ 3079229 (-) True LOC113523961
XM_026910075.2 mRNA downstream 594156 2517791 ~ 2524179 (-) True LOC113523971
XM_026910080.2 mRNA downstream 611195 2498979 ~ 2507140 (-) True cbx2
XM_034301639.1 mRNA upstream 40944 3178517 ~ 3188087 (-) True LOC117595704
XM_034301638.1 mRNA upstream 46656 3184229 ~ 3196535 (-) True LOC113525117
XM_034301637.1 mRNA upstream 46656 3184229 ~ 3196530 (-) False LOC113525117
XM_026911562.2 mRNA upstream 69335 3206908 ~ 3222780 (-) True jpt1b
XM_026911585.2 mRNA upstream 86492 3224065 ~ 3234324 (-) True LOC113525126
TU473971 other downstream 154178 2961713 ~ 2964157 (-) True G399490
TU473396 other downstream 691729 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 870104 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1237277 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 1253492 1730090 ~ 1864843 (-) True G398890
trnay-gua_7 other upstream 31761 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 65717 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 86527 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 127140 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 136267 3273840 ~ 3275955 (-) False G399489

Expression Profile