RNA id: XM_034301651.1


Basic Information

Item Value
RNA id XM_034301651.1
length 5347
RNA type mRNA
GC content 0.52
exon number 34
gene id adgrb2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8615005 ~ 9005331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCACAAGGTCATCCCAGACTCATTTGGCCACCGATATTCACAAGGACAAATGACATAGGATGAACACTGCTGCCcagctgtgtctgtgtttgctgtCGTCCCTTCTCACCCTGGCCTGGGTGGCAGTGCCGCTGTGCCAGGCTTCCCCCTGCTCCTCCCTTGTGGCAGGGGTCCTGTACGGCTCCTTCTCCCTCAGGGACCTTTTCCCCGGCCCACACGGCCTGAGAACTGGCTGCTCGTGGACCGTGGAGAACCCCGATCCGACCAAGTACACTCTCTACTTCCGCTTCAACCGCCACGCCGGCTTTTGCCTAGCATTCTCACCGCTAGTGTTGCCCCTGGACCACTACCTCCCCAACCAGACGTGTGGACAGGCGCTGCCCGACCCGGAATCCGTAGAGCCGTGCCAGGTACCTGGTCCTCATGCTTTCCTGCAATTTGATAAGAACTTTGTGCAATTGTGCCTCGCTGCAGAGACCAAACAAGATTCCGATGAAGTGAAGGGACCTCTGTCTGCTGAAACGTTGGACTTCAGGCTTGTGGAAGTTCTGCTGATCAACAATGAGAATTCCAGCCAGTTTACATGTGGCGTGCTGTGCCGCTGGTTTGAGGAGTGCCTCCGTTCCGGCTCTGGTAGAGAGAGTGAAGGCTGTGGAATCACCCAAACTGGCTGTGTGTGCCCTAACGCTGGGCCTCCAGTGCCAATACTGCCCGCTACTCCCCACAACCACTCTCTGGACCCCAGTGCCAGTGTGCTGCTGCCGCCCACTGATGACTGCTGTGTCACCCAACTGCATGGCAAGAACGGTATCTCCAACATTGCACCCAGAGATGTTCATCAAGaCTTTGACGATGATGAGCAGAAGGTCAAGACCCAGAGGCCAAGATCAGCGGACCAGCCGGGAGTGTTCCAAGCCCAGACAGGTGATCCAGCAGCTGAGGAGTGGTctcagtggagtgtgtgttcgCTGACGTGTGGGCAGGGTTGGCAGGTGCGTACTCGCTCCTGTGTGTCCTCTCCTTATGGCACACTGTGCAGCGGGCCGCTGAGGGAGACGCGCCTCTGCAACAACACTGCCACCTGCCCAGGTGAGCCACAGCATCAAGCAGTGCGTGGCCTATGGGAGGAGTGGTCTGCGTGGAGTCTGTGCTCGGTCTCGTGCGGCCGGGGCTCTCGGACTCGGAGCAGGAGCTGCACGGGCCCTGAGCGCCGAGCCGAGGCCTGCCCAGGTCCTGATGTGCAGAACAAACTCTGCTATATAGCTGTGTGCCCTGTGGAGGGGCAGTGGTTGGATTGGGCTTCTTGGTCTCGTTGTTCAGTATCATGTGGAACTGGCACTCAGCAGAGGCAGCGGCGCTGCAGTGTGTCTGTACACGGCTGGGCCGAGTGTAAAGGTCCGCACTCAGAAACGAGAGAGTGCACTAACCGGCCTTGTGATGGAGGTGGAAACTGGGGAGCATGGAACCAGTGGAGTCTGTGCTCGAAGACATGCGATTCAGGTTGGCAGCGCCGCTTTCGGATGTGTGAAGGCACAGGAATCCAGAATTACCCCTGCGATGGTTCAGGGGAGGAAGTGCGCTCCTGCAACGACAAGAAGtgcccagCACCTCATGAGATATGCAAGGATGAGTACCAAGGTTTAATGACATGGAAGAGAGCTTCCGCTGGAGAGACGGTCTACAACAAATGTCCATCAAATGCCACTGGATCTGCTAGTCGTCGATGTTTGCTGGACGCTAATGGAGTTGCTTACTGGGGTCCTCCGAGCTTCGCCCGATGCATCTCACTTGAAtatagatatttacatttatctTTACGAGAGCATCTTGCGAAGGGTCAGAGGACCCTGGCAGGGGAGGGCATGTCTCAGATCGTGAGGAGTCTCCTGGAGTTAATGTCCCGCCACAGCTATTATAGCGGTGACCTCTTATTCTCCGTGGAGATTCTCCGAAATGTGACGGACACCTTCAAGCGAGCAACCTACATCCCAGCTCCCGACGACGTGCAGAAATTTTTCCAGATAGTCAGCTTAATGTTGGACATGGACAATCTTCAAAAATGGGAAGATGCTCACCAGGTCTCTCCAGGCGCCATGCTACTAATGCGAGTTGTGGAAGACTTCATTCATCTCATCGGTGAAGCGCAAAAGCCTTTCCAAAGCTTTCTTGCTGTCACCACTAACCTCAtAATCAATATCCAACGAGAGCCAGTGTCAGCTGTCTCCAGCGACATTAACTTCCCTATGAAGGGAAGGAGGGGGATGAAGGACTGGGCACGCTCAGCAGAAGACAAGCTCTTCATCCCTAAAGAAGTCTTCAGTCTGTCCTCTGATGAATCGGATGAGGCTTCCTACTTTGTTATTGGAGCCATTCTTTACCGCACCCTTGGCTTTATTCTCCCACCACCGAAAGATCCTTTGGTGATCAGCTCAAAGATTTTAAGCGTCACAGTACGTCCCCTACCCAAACCCACCGAGCCAGTGGTAGTGGTGGAACTGGCACCTCTGCTGAATGGCACATCACAGCCACAGTGTGTTGTGTGGGACCACACCAACCCtgaggctggtgaggaaaactGGGACGCCGAAGCCTGCAAAACGCTCCCGTCTCCAGCAGTCCACACTAAATGCCTCTGCAGCAAGATTTCCACCTTTGCAGTGTTAGCACAGAAAGCTAAAGACCCGgaCATGGGACCATCCAGCTTGCCCTCAGTACCACTCATGGTGGGCTGTGGGGTGTCCTGCATGGCTTTGCTCATCTTGCTGGTCATCTATGCTGCCTCCTGGAGGTACATTCGCTCTGAGAGGTCCATCATACTGGTGAACTTCTGTCTGTCCATACTGGCCTCTAACATACTTATACTAGTGGGACAGTCTCAGACTCTCAgcaagGGGCTGTGCACTGTGACTGCTGCCTTTCTCCATTTCTTCTTTCTGGCCTCTTTCTGCTGGGTTTTAACAGAGGCGTGGCAGTCTTACCTTGCTGTGATTGGCAAGATTAGGACACGCCTCATTCGCAAGCGTTTCCTGTGCTTGGGTTGGGGTCTGCCAGCCCTGGTTGTTGCTGTATCTGTAGGATTTACCAGAGCTAGGGGCTACGGCACACCAAACTACTGCTGGTTGTCTCTGGAAGGAGGTCTGCTCTATGCGTTTGTTGGTCCTGCAGCCGTCATTGTTTTGGTGAACATGCTTATTGGGATCGTGGTCTTCAACAAGCTCATGTCGAGAGACGGCATCTCAGACAAATCTAAAAAGCAAAGAGCAGGTCCGTCGCTGGAGGCGCGTAGCAGACTGCTCCTCCAGTGCTCCAAGTGTGGGGTGATCTCCAGCACCGCTCTGTCCAGCTCCACCGCCAGCAGCGCCATgaCGTCATTGTGGAGCTCATGCGTTGTTCTGCCACTGCTGGCGCTCACGTGGATGTCAGCAGTGTTAGCCATCACGGATCGGCGCTCCACGCTCTTCCAGGTGCTTTTCGCAGTCTTCGACTCGGTCCAAGGCTTCGTCATCATCACTGTTCACTGTGCCATGAGGCGAGAGgtACAAGACGCTGTGCGCTGTAGGATGGGTGGATGTAAGGACGACAGTGAAAACTCGCCGGACTCCTGCAAAAACGGCCAGGTGCAGATCATGACTGATTTTGAGAAAGACGTGGACTTGGCATGTCAAACAGAGAGAGGACATCCATTCATCTTCAAGGAGGTGAACACATGCAACCCAGCTAGCATCACGGGCACACTGTCACGCATTTCCCTGGACGACGAGGACGATCCCAAGTTAGCCACCCATCAAGAAGGCATCAACTTCAGCAGTCTGCCCGGCAACATCCCCCCACCCAACCTCCTGGCACAGGTGCCAACTCTGGGCACGTTGAACGAGCTCAACGAGACACCCCGGAAAAAGGAGGTCAATGTGGAACAGCAGGGCCAGCACCAACGCTCTGCACCAGTCTACCTGTGCACGGAGAGTGCATTGGGATGGGCACGGCCGTCTACTGCTGTCACTGACCCATCAAGCAGTGTAGGGGGAGGCGAAGGGGACTACATGGTACTACCACGGCGGACGGTCAGCCTCAAGCCCAATCCGatacaggaagaggaaaaacCTCTCAATATCAGTGTGGAAGACCCACCTTTTCCTCCGCCCCCTTCACCCATGACCCTTCACCCGGCTGAGAGTGAGCCATACCCAGCAGACTTTGCCACTGTGGACCATGTTGGTGTAGGTCTGAACCGATCCTATGGTACTGTCAAGCAGGTACCCGGCCTCGCCAGTGCCCACACGCTGCAGGTGAAGCAAAGCCGGCCATCCATCAGGCAGATCTTCACATCCGGCAAGGCAGAACGCACCAGGACCCTGCCCCGCAATTTGGGCAGCGCCAATGCCAATGTCTCAGCTGGCTCCCTGGAAAGGAAAAGAGTACGATACTCTGAGCTGGACTTTGAGAAAGTGATGCACACTCGCAAAAGACACTCAGAGCTCTACCATGAACTCAACCACTCCACCAAGTTCCACACCATAGATAGGTATAGCAGGGACCCTGCCGTGACCATGTTTAAGagagaaaagcGACGAAGCATTTCATCTGCCAGTGGTGAAAAGAACTCACTGAGTGACAAGGCCACAGCAGATGAGCAGCAATCCTGGGACAGCTTTAAGACAATGACAACCGAGCCATCGTCCGGCTCCGGCGGACAAAAAATGGATCGAGTGGAGCTGCACAGTAAAGCCTGGGATGCTTCCTCTGCAAACACTCCTGACACATCCGAGGGAGACTTCCAGACTGAAGtgtgaggaaacacacacaccgaaaGGACACACGCATAAATGGAATGAGATTTACCAAAAGGAGAATCTATAAAAGGATTATACATTTGTTTACGAGAAtagaccattaaaaaaaaaacttctataTTTTCACATGGACACTTTCAGTGAACAAAAACTGGGGCTCGGAGAGTATATgggaaaatttttaaaaaactgtttctgAAATGTCTTGATTTTACTCTGGAAAGGATTCTCTTTCACACATttggaaatttggaaaaaaaaaatatttctgcacCATCCTTTTtatagagatttaaaaaaaaaaatacccccGTACTCATGTTTCGCACATGTGATCGGCACCATAGGATTTTGTTCCACCTTTATGTCCTGTCTTTCCTAATAAATGACTCTCTCTGTTTTTGGGGGAAGGGGGAGGTTTAACACGATTCATTAATAGGATCAAGAATCAAACCTCTTTTGaagttgtcatttttattttttggatttttcccAATATTGTTTAATTCATTTGCTTAAACAgtggaagattaaaaaaaaaagatttctgtgCAA

Function

GO: NA

KEGG:

id description
K04597 ADGRB2, BAI2; adhesion G protein-coupled receptor B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477491 lncRNA downstream 201 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 92961 8521358 ~ 8522044 (-) True G402142
TU477192 lncRNA downstream 106879 8449495 ~ 8508126 (-) True G402129
TU477180 lncRNA downstream 166702 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA downstream 178101 8433844 ~ 8436904 (-) True G402122
TU477770 lncRNA upstream 133686 9139017 ~ 9141823 (-) True G402674
TU477769 lncRNA upstream 138539 9143870 ~ 9161470 (-) True G402673
TU478003 lncRNA upstream 614799 9620130 ~ 9620599 (-) True G402892
TU478213 lncRNA upstream 725352 9730683 ~ 9731257 (-) True G403080
TU478200 lncRNA upstream 754314 9759645 ~ 9760497 (-) True G403072
XM_026942393.2 mRNA downstream 70145 8452086 ~ 8544860 (-) False col16a1
XM_026942396.2 mRNA downstream 70145 8452086 ~ 8544860 (-) False col16a1
XM_026942394.2 mRNA downstream 70145 8452086 ~ 8544860 (-) False col16a1
XM_026942395.2 mRNA downstream 70145 8452086 ~ 8544860 (-) False col16a1
XM_026942392.2 mRNA downstream 70145 8452086 ~ 8544860 (-) True col16a1
XM_034301689.1 mRNA upstream 222064 9227395 ~ 9284493 (-) True runx1t1
XM_034301690.1 mRNA upstream 222064 9227395 ~ 9269400 (-) False runx1t1
XM_026942283.2 mRNA upstream 222064 9227395 ~ 9251794 (-) False runx1t1
XM_034301688.1 mRNA upstream 222064 9227395 ~ 9251794 (-) False runx1t1
XM_026942443.2 mRNA upstream 381664 9386995 ~ 9416253 (-) True triqk
TU476702 other downstream 1338361 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 2178957 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2240515 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2439745 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 3025258 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 143180 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 222064 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 371595 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 381671 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 1497958 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile