RNA id: XM_034301653.1


Basic Information

Item Value
RNA id XM_034301653.1
length 4175
RNA type mRNA
GC content 0.50
exon number 21
gene id cgnb
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13689122 ~ 13726155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGACGCCAGCGCAACAGGTTGTCGAGAGGGTTTTATTTAATTCCCGACGCTGGACTGTGTGATCTCTCCATCCttattttaaaagcagcatTTGCAGAACCACATGGTGAGCAGTAAGCGTGAAGCGGACCTGCCTCTGACTGTACAGCTGTGTGGAAGATTGGCGCAGCTTTGTTTAGTTTATAGGAGAACAGGACACTAATGTTTCCTCTCCACACTGCAGCAGTCTCAGCTCCATTCAGCGCTACATTCACTCCAGCTGGAGCTCAGCCCCTGCTTCCTCCTCAGAGCGCGTGTGTTCCGTGAGCCACAATGAATTCCCTCTCAGCAGATAGAAAGCCTCCAGTGGACCATGGTGTGCAGATCCGCTTCATCAAAGACCTGGATGATATGGGTGGAGGTTATGCAGAGAGGAGTCGAGGTGTTGGAGGAGCTGGAGCTGCTGGTGGCAGTGGCACTCCTGCATCCTCTACGTAtggtgttgcagtgagggttcAGGGCATTTCTGGACAGCCCTATGTGGTGCTGAAGGATGGAGAGAAGGGTGACTCATATGGAGTACGACTGAAGACCCAGCCTCAGCCACAGACCCCAATTCTTGGACTTTCGTCCCCATTTAAGAGCCTGCCTCCAAGACCACGCGATAGTCCACAGACTCCTAAAGTTCCTTACAGCTCACTTGGGCCACTAAGTTCACCAGAGGAAGAGACTGTTGAATTTGGGAGTCCTTTGAAGAGGCCACCTGGTGATGGGCAAGCAGGAAGTCaaggagatggagaaagagggaCTACAGAAAATCCTGTATCTGCTCCTTCATCCAAAGACTCTGAGAAGAAAGACTTGGGAGAGCTGAATGAAGCTGGTCTTAGGCCAGTGCGGCAGACTGGAATTGGTGGAACTGTGAATGGGACAGGGAAAAGAGGGAATCAGTATACCTCTACAGAGCCATTCCCTGGAGCTTCAGCACCTGGTACTGTTGAGGAAAAGCCAGTTGAAGCCATCGACACAAAATCTTTAGCACCCATTAATAAACTTATCAGTAAATTTAATGGCAGTGCCACCTCCACCATGCCAAGCCGGATCAGAGGCCGCTCTCGAGCACGAGCATGTCTACAGTTTGACGAGCGAAAGCGTTCTCACAGCTTGGATGCTCGCAAGGAACAGGAAGAAGAGCCTCCTCCCTCACCAACCATAAACCCCTACGCTCCTACAGTAAACACCAGCTCAAGCTCCAGTCTTACCTCACCCAAACATACAACCTACAACAGTCTTGGACAGAGCTCTCCTTCCATCGCAAAGGTGCCCGCTGTTCCTACTTCAAAGGCACCTACCATTAATCAAACTCCACGGATGTTTGTTGCCAAGGAAGTGCCATCTACTATATCAAAGAAACAGGTAACTCCTGATCTTCTGAGTAGCCGAAGTCAAAGTACAGATTCCATTAATGGAGGtgaagctgaagaaaaacaggtGATCTATGAAGTCCTCAGAGAAGGGTCTGCTGAGAGTGAGACGTCCCTGAGGCGAAAAGCAAATCTCATTCATGAGCGGTACAGAGGGCTGAAGGAGGAGAACGAGGCAACAGACAATCGCTTACAGCAGCAGCTCGATCAGACCAAGAGAGAATTGCAGCATGCCCAGGATCGATTGGTGGAGCTTCGCTTGGAGAAGGAAGGGGTGGAGTCTCGCTTTCACCAGCAGGAGGATCAGCTGGCTCAGCTACAGGAGGAGCTGAGGAGAGTATCGGAGAGCACACCTCAAACAGACTCAATGCACATGGACCTGGTGACGCTTCAGACTGAGCTGGCTGAGGCGGTGATGCTGAGGCAGAAGCAGGAGGAGATGCTGCACATGAGGGAGAGGGAGCTCACTGCCCTGAAGGGGGCACTAAAGGACGAGGTGGCCGCCCACGACAGAGAGATGGAGGCACTCAGAGAACAGTACGGCCGAAATATGGAGGCACTTCAAAAAAGCATGGAGCATGtatcacagTCCCAGCAGGAGATAGAGGAAGAGCGGCAGAAAGTGAACGCCTCGATTCTGGCTCTGGAAGACGAGCTGGACAGTTACAGGGAGCAGGGCGAGCACTGGAAGGAGCAGATGACCTCAGTCAAACAGGAGCACGGGCCGCACAGCACGTTTCAAAAACTGCTGCAGGCTCAGCAGGAAAAGAAGGAACTTGAGGAGAAACTGCTCAGCGTGAAGAAGCAGACTTGTGAAACAGACTCGCGCTCTTTCACTCAGGTTCAGGAGCTGCAGCGATGTCAAGATGATCTTAAACAGGCACGTCTGAAAATAGATGAGCAGAAAGCCGAGTTggtgaagaaggaggaggagctcCAGTCTCTGAAAAGAACCAGTCAAAACAAAGAACAGGAGCTTGAGGCTGAGATTGACAAACTGAAGGACCAGTCAAAGAAGGACAAAGAGGAGCATTCCAAAGTGCTTGAGAAGATGCAACAgTCTTTAGTATCGTCTCAGGATCCTACCAAAGACAGTGCTTTGGACCTTCAGGAGGCTAACACTCGCCTTAGAGAGAGAATTGCCCGCATGTCCCGGCTGCACACCAGTCTGCCCGACAGTGGGGCTTCAGATGCCCTGGAGGAGGAGAACCGGTACCTGAAGACGCAGCTGGAGGAAGCGCGGCGTGCAGCATCCCGCCTCAGCCACGAGAAAGAGGAACTCAGCCGCCAActggaggaaaaagaaaaagagagagaaattctgCGCCATGCCAAAGCAGACCTTGAAGAGCAGAAGAGGCTGCTTGACCGAGCACTGGAGAAGATGAACAAAGAGATAGACCTGATGATGGGTGATTCTCGGCAGTCTGTGCAGAATCTGCAGTCTCAGCTGGATGAGTTTAGAGATCGGTCTCGTAGAGAGCTTCAGGAATCTCAGAGACTAAACAAGGACCGACTGGTTGAGCTGCAAAGAACGCAGAACAACCTCAAAGCAGCACAGGAAGAGGTGTCGCGTCTAAAGAAGGAACTGCTGGTATGTTCTGAGGAGAGGGATAGTGCTCAGCTGGATAAGGAGCTACTGAGCAGCCGTCTCAGACAAAAGGAGAGTGAGCTGGACAGTGAGAGGACCTCGCAGACAGACCGCAGCAGAGACGGCttctagaggtgtgtgtgtGATAAAGTAAAGGCTTTGGAGATAGAATTGGATGAGGAAAAGACTGGAGCAGAGCTTCTGAACGAGCGCATGACACGCAGCCGAGAGCAGgTGGACCAACTCCGCTCTGAACTGATGCAAGAGCGCTCAGCCAGACATGACCTTGAGATGGACAAGAGCTCAGTGGAGAGACAGgtAAAAGAGCTGAAGTCTCGTTTAGCTGATATGGAAGGTCAGCCTCGATCTACTGCAGGAGTCACCATACTGGAAAGCAAAATTCAGGAGCTGGAAGATCGGTTACACAGCGAGGAAAGAGAGAAGAGCAGCATTCTAGCAGCCCAGAGGAGGACGGAGAGGAAATTAAAGGATGTCAATGTCACACTGGACCAGGAGAGAAACCAGCATGCTGAACAGCGAGACCAGCTCTCTCTGCGTGTGAAGGCACTGAAGAGGCAGCTGGATGATAGTGAAGGAGAGGTGGAGAGATTGGAGGGAGTGAGGCGGAAGATTCTGAGGGATctggaggagcagcaggagctGAAGGACGTGCTGCAGGCCAAAGTCACTGCGCTGGAAAACGAGCTGAGGAGGAAGATTCAGCAGACGCGGCGTCCCACGCTGGGGTCCACTCTAAGctcagaggaggaggatggatGCTTTGATTCTAACAGCATCACGTCCATCCTGACAGAATCACAGCTACAGACCACCACCTGCTGAAGAGAGCGTGAAGAGTGAAACGGAAAACATGagaactgtgtttatatatctCATTCTACTGAAAGATAATCGATGATTCATATGAAGCATATCAGTTAATGAATGCCTTAATTCTGTACGGGAAACACAAAGTGCCTGAAAGTTCTAGTTTGAAAAGTTGCTAAGtgatgaaaagagaaaactctTAGTGCTTAAACCTTTATAAAACAATtcctttttaaatgaagagttaAGTAGATTAGTGTAATTCAGAAATCTGTACTGTCCTTTTTACTGTATAACTGGCTATATGTTTAATCTTGACTAGTTATATAAAGATTCTTTCTTTCCAATTCA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component

KEGG:

id description
K06102 CGN; cingulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480893 lncRNA downstream 83230 13601027 ~ 13605892 (-) True G405353
XR_003403560.2 lncRNA downstream 125173 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 144717 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 234325 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 322346 13366437 ~ 13366776 (-) True G405144
TU480934 lncRNA upstream 9381 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 82328 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 89743 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 89743 13815898 ~ 13869755 (-) False G405420
TU480988 lncRNA upstream 89743 13815898 ~ 13839833 (-) True G405420
XM_026928526.2 mRNA downstream 10831 13646267 ~ 13678291 (-) True tuft1b
XM_034301811.1 mRNA downstream 50997 13603327 ~ 13638125 (-) False ubap2l
XM_034301812.1 mRNA downstream 51145 13603327 ~ 13637977 (-) False ubap2l
XM_034301810.1 mRNA downstream 51145 13603327 ~ 13637977 (-) True ubap2l
XM_034301814.1 mRNA downstream 51147 13603327 ~ 13637975 (-) False ubap2l
XM_034301670.1 mRNA upstream 2972 13729127 ~ 13734761 (-) True pygo2
XM_026928285.2 mRNA upstream 2972 13729127 ~ 13734755 (-) False pygo2
XM_034301583.1 mRNA upstream 20723 13746878 ~ 13750446 (-) False s100s
XM_034301584.1 mRNA upstream 20723 13746878 ~ 13750443 (-) False s100s
XM_026928111.2 mRNA upstream 20724 13746879 ~ 13750465 (-) False s100s
TU480779 other downstream 130502 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 296387 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 548007 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1109471 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1110321 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 33606 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 33606 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 355217 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 388464 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 817062 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile