RNA id: XM_034301660.1


Basic Information

Item Value
RNA id XM_034301660.1
length 2134
RNA type mRNA
GC content 0.47
exon number 5
gene id si:ch211-152p11.4
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6453520 ~ 6461157 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGAAGAGTGTGTCTCAGAAGAATGACCGCTCTGATAATGTGGATGGATCCAGCACCTGTAAGACCCTGCCATGCCAGGGGAAACAAAGTGGATCACGGAGCGGCCTCTCTGCCTGCCACACCGGCCGCTTTGCAGGACCCCGTGAGCAGCTCAGCGAAGGAGCTCTCCAAGGAGCTCAGCTTTAGTGTAGAGGATCTTACAGAACTAGACATACCGTCTGGCATGCTGAAAGTCACCAATCTCAACGAAAGCTTCAAAGCGTACAGTGACAGTCAGCTGGCGCCGCATGCTATCAGCAACGGTGAGAGTGTAGAGAAGGACGACGTTCCGTCTCTGTGTCCATCGTCCACGTCCACGCTCAACCCCGTCTGCTTTAACTCAGGCTCAGGGACACACCAGAACCGGCACCATGTCCGGGCCAAGCTGTCGTCTGCTAAATTACATCTGAAGAGTCTGTTTGGGCAGAGCCCCCACTCTTCCAATCCCAGTGTCACAGTACCGGAGCCCAGAGACCGGGAAAGCAGTGCCAAACAGCGGCGATCCCGCTTCACAAAGCAGTGGAGTCAGGTGGGTCACGCGAAGACACGGCTCAGCAGGGCGGAGCTGGAGAAATGGGCTGAGTCGCTCGACGTCATTCTCAACAGCAGAGTGGCCGTATCCGTGTTTGGCGCATTCCTCCGCTCTGAGTTCAGTGAGGAGAACCTGCAGTTTTACTTGGCCTGCGAGCAGTACAGACAGTCGTCCAACACCTTCAGCCTGGGCCGACGCGCCAAGGAGATCACTGCCACCTACATTCAGCCTGGTGCACCTCGTGAGGTAAATTTGGACAGTAAGACCCGAGAACTGACGCTGCAGCTGCTGAAAGCTCCCTCTCACAACTCCCTGTGCCATGCTCAGAAACGCATTCGTGCCCTACTGGAATATGACTGTTACCCTCGCTTCCTGCAGTCGAACATCTACCTCACACTCCTACAGGATGCTCACTAAGTGCATGTGGGTCAAGGAGACATCCTGAGGGCATTTAATAGAGTGATGGACACAGGAATGCCTGAAAAGGCAGGCAGGGTGGTGCTGATTGTGATAACCCTAGcttgaaaataataaagaattaatAATGATAGAATAAGCAAAACTTCTTTCCTGCTCTTAAGTTAATGTATTGTTGGAAATAGTAGAGTGGTTTAAATGAGGGGCGGGGAAAAAAGCGCTGATGTCTTCTTTACACTGTAGTACATTGTTATCCAACTCACCCAGTAGTCTTAGGCTAACTAAAGTGCACACTAACTTGTAATCATTACCTAAGACGCTGGCTCCCATCATGCTTGAGTGAGCAAGAGCAGAACGGCATGCTTACAGAAAGCGACAACTCGTCAGGCGAGATTGGCCTCCTCTCAAAGGGTCACAGCACTGGCAGTACAGGAATATCATGACATTTTCCCAGGAATTCCTTCCTACCTGATTCAACAAGTGTGTTTGGCAGAAGACCAGTGGCGGTTGTAAAGTGACCCAAGGCGCCAGGCTTGTGTATAGAATTCCTCACTGTTGTTTATGTTTCTATCAGTTTGggatatttagaaataaatcatgttttatataGTGTCTGATCCCTAAACAGAAgtcacagcatgttttattgtttctgaTCCTTCTACATTAGTCACAAGATacattgttgtcttttttttgttgttggacCACCTTCGTAACAAGAGCACCACTGTCCTTTTAATGTCCTCGTCTCCTTTAGTGTCTCTTGTGGAGTTCTGCTGCAGGCTGGATACACAAGTGAATGTTATAGAGCGAGACTGGCTTTCAAGGCTTTCTCAGTTGTATAAGAGCTGGAAATGTGGCCATATTCACTGTGTGAAATCCCACTCTGACATGTCATTTAGTCTTTTCAACAAGTCCACTGGATTAAATGTTGAGTGCTGCACTAAATGGCTGTTTAATGAGCCACAAGAGTTTCATTTTCTTGACTTAAGAGctcttaatattatttttaggaTGTTTCAATGGAAAACTGGGATGTTTGACATGTCTATCCTACAAAACATAGCACTTTGTTAAGATTGTGTCacattttgtgtgaatttaGGTAATGgtggtttaaaaataaagttgctCCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404449.2 lncRNA downstream 16446 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA downstream 16492 6435540 ~ 6437028 (-) False LOC113543850
TU476320 lncRNA downstream 47642 6405306 ~ 6405878 (-) True G401403
TU476302 lncRNA downstream 93543 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 203484 6247456 ~ 6250036 (-) True G401259
TU476428 lncRNA upstream 104880 6566037 ~ 6567293 (-) True G401482
XR_004577578.1 lncRNA upstream 117871 6579028 ~ 6581192 (-) True LOC117596453
TU476432 lncRNA upstream 124696 6585853 ~ 6586574 (-) True G401486
TU476437 lncRNA upstream 133551 6594708 ~ 6594940 (-) True G401491
TU476481 lncRNA upstream 280900 6742057 ~ 6742274 (-) True G401526
XM_026942425.2 mRNA downstream 19681 6429098 ~ 6433839 (-) True c29h6orf47
XM_026942448.2 mRNA downstream 30694 6406106 ~ 6422826 (-) False vars2
XM_026942447.2 mRNA downstream 30694 6406106 ~ 6422826 (-) True vars2
XM_026942250.2 mRNA downstream 48511 6392969 ~ 6405009 (-) True mgat1b
XM_026942257.2 mRNA upstream 9045 6470202 ~ 6529172 (-) True adcy2b
XM_034301571.1 mRNA upstream 68023 6529180 ~ 6554991 (-) True tent4a
XM_034301572.1 mRNA upstream 68024 6529181 ~ 6554991 (-) False tent4a
XM_034301573.1 mRNA upstream 77459 6538616 ~ 6554991 (-) False tent4a
XM_034301568.1 mRNA upstream 77459 6538616 ~ 6554991 (-) False tent4a
XR_003404453.2 other downstream 17472 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 79030 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 278260 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 863773 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1445059 4961102 ~ 5008461 (-) False sept7a
TU476702 other upstream 800183 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2687354 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2766238 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2915769 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 2925845 9387002 ~ 9416207 (-) False triqk

Expression Profile