RNA id: XM_034301667.1


Basic Information

Item Value
RNA id XM_034301667.1
length 4016
RNA type mRNA
GC content 0.58
exon number 15
gene id ubn2b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3585274 ~ 3600490 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGGAGTAAAAATCCGTTtagtgatattttaaaatggccCCCACCACAGAGGCTCCAGCTCCTGCAGCAGCTCCAGCGCCTTAGCTACATCTCCAACTCCCGGTCTGATTCCTGGACAGATATCTCagctcagagaaagagagagagagagagagagagaggaggaggaggaggagaaagactgaaatatttctttagTCGGTTGGAGTTTGTTTTACGAACTAGCttctaagctaagctaagctaagctacaTGTTTACTTGGCCGGCTAGCTAGTAacgtaaagattttttttctttgctaaatgcTAGCTAGCTCGTGCGGCTAAGTTACTTTAGCTAGCGTAAAGCTAGTCTCCTcggcaagtttttttttttttttttttcttctctttctctttcctcaaaTGGCCGATCCGAGGAAAGTGCCCTTCGTGACTCTGGCTTCGTTTAACACCTCGACGCCGGTGCCGGAGTCCAAGAAGCGGCGGAGGGAGGAAGAGGGCGAAGGCGGTCTCCAGCAGCACGGGAGGGACGGAGGGCTGTTCAGTAACGGGAAGAGCTCCGGGACTGACTGCAGCGCCGCCGGTTCCGCCGAGTGCAGATCCACCGTGAGACTCAGTCTGTCCCTGTCCGAGCCCAGCGACAAAGGATCCACAGAGTTCAGCTACACCGAGCTGATCCAGCAGGCCACCCAGCAGGTGAGAAAAGCTCCTGAAGGACTCACGCCGGCGCTGGACCCGAACGACCCGCTGGCTGATCAGGATCGAGAGAGACGAGAGGTCGAAGCTCTGGCCAGGAAGTTTGAGAGTAAATATGGCGGCAccgggaagaagaaaaagaaggatcGGATGCAGGATCTCATTGACATCGGATACGGCTACGACGAGACGGATCCGTTCATCGACAACTCTGAAGCTtacgACGAGCTGGTCCCTGCCTCCCTCACCACCAAGCTGGGAGGCTTCTACATCAACACGGGCACTTTGCAGTTCAGACCTGCGTCCGAGAGCGAGGACGAGGACAGGAGCAAGGACGGAAACCACTTCAAGAAGCTGAAGGACGGAGAGGAGCGAGTGAtcaagagaagaaagaagaaagacgGCACTTTAGAGGAGAAGAAACCCAGAAAGAATCGAGTGTCAAAGCAGGGGGTGTCGGCTCTGAACCGACccgagaagaagaagaggaagaagctgATGAAGGACTCTCTCTCGCTGGCGGCCATGATCCGTCGCTTCACACGTGAGAAAGAggagatgaggaagaagaacCCCGCTTCTGCCGCCGTCACCGCGGCCCCCGGCACCGCCGCGGGCCTCAAACCCCCGAACGTCAACCGCACCGTCCTCAACTCGCACTCCGTCGCCCCCGGCAACGACCTCGCTGACCTCACCAACGATCCGGCCGTCATTCCGCTGCTGGGTTCGGCTAACGACGACATGCTGCAGGACCTGATGGACGAGCTGGACTTCTCACTGCTGGATCCTCCCGAGCTGTCGAGCCTCGAGGGTCAGGGCGAGAACGGTAACGCCGCTGTgcagagagcagcagcagcagcagcagcagcagcaggagcctCAGCGGGACGCGTCCAGAGGACCGGTCTCATCCCCCCTCCTCCACTGCCCAGCGGCCTGCCCGCCCCCCTCGCCAAACGCATCGAGGACCTGCGAGCggcgTCTCGGCAGTTTGACATGGAGGGGAGGAAGAAGTTCTTCACGCTGGACATGAACAACATCCTGCTGGaCATTGAGCTGCAGGTGCAGGAGCAGCCGGTTGACGTGCGCGCGGCCGTGTACTCCCACCTGGAGGCCTTCGTGCCGTGTAATAAGGAGGCCCTGCTGAAGCGACTGAAGAAGCTCAGTCTGAACGTGCAGGACGACAGGCTGAGGAACCCGCTGCTCAAACTCAAGCTGGCCGTCTGCAGCGCCATGCCCGAGCAGATCGCCCGCTACAACATGGACTGTCTGGCCAAAGTGGCAAAGCAGCAGTCGGAGGAGGGCGAGAAGAACGGCtcagaggaggaggacgaggagagGCCGGGCAAACGGGTGATGGGACCTCGCAAGAAGTTTGTGTGGGACGATAAACTCAGggctCTGCTGTGTAATCTGGTCCGAGCGAAGCTAGGCTGTTATGAGGCTGAGGGTCAGAGCTCTCCCTCTCCTGAAGACTACCTCAAAGCCTTTATGGAGACCGAGGTGAAACCCCTCTGGCCCAAAGGCTGGATGcaggccagGATGCTGATTAAAGAGAGCCGCATGGCCCACGGCCACCTCACAGGAAACAcAGTGAAGAAGACTCCCAAAGCTAAACCAAaaTCTCAGGATGGCGTTTGGCTCCAGCAGTCGACCACGCCCACTGCCACGCCCTCTCCCCAGGTGCCCCTCCCTCAGCGGCCCCCCTCCCCCTCGGAGCCCATCTGCCTGTCGGACTCTCTGGATGAGGATTTGGGCGGAGCCCCGTCTCTGGACTCCATCTCGCATGCTCTGGCTCTGCTCAGCAGCGCCGCCAAGGGGTTAATCCAGTCCAACAGCCCGCCCTCCCCTGAGGCTGTTAAACCTGTTAACTCGGGCTCTACACTCGGCCCCGCCTCCTCCATCAGCTCCTCCACCCCTGTGCTTCCTAAAAAGAGCATCATCAATACCACTGCGTCTGCTTCTCCGGCCACTGGTGGCCCAATTTTTgtctcctccacctcctcctctagCTCTTCTCCCTCTCCAGCTATCTCTCGGCCTCcatctgtgtctgtttctccCTCCATCCGGAGTGACGGAATAGGAGGAACAAAGGTTGGAGCGGTCGGTCTGACTCAGGTGCAGAGACACAGTCTGACGCCGCCGCAGCGACCCATCGCTACGACCATCGCTGCAGGCAACAGCAACAAGACGAGTGCAACATCTCCACCTAAACCGAGGCCGCCGCCCACTGCCTCGCCCCTTATCCCGCCTCACAAGAGCTTAAATTCTCCCATGGCCACACCCCCAGGCCACCACAAACCCGGCAATAATAGCAGTACCATCGGTCGAATCGGTGCGGGCAGCACGACGCCGTCATCTCAGTCTCACTCAACGGCACTGCCCATATCTTCCTCTTCGTTTTCTTCATCCGCTTCCTCTTCTTCTGCTTCCTCACACCTCAACGCTAAAACGCAGCCCAAAATCTCCTCCTCCCCGTCTCCGTCTCCGTCTCAGCCCAAACCGCAGCCGCCGCAGCATCAGCACCAACAGCCACAGCAGCAGTCGACGTTCGTCACGCCGATGCAGGCCACGCTCACCAAATCGCCCCACAGCTCCAACTCTCCCATCCTCAAGCTCACTCCGCGGGTGACGCCCGTCAGCTCCCCCTCACCCGCCCTCTCCAGGACGCCTACGTTACCCAGCATGCATCAGTTCTCTCCTAAAACCGCAGGCTTCCACACGGGGTTCTCGGGCGTCGGCGCCAGTTACAGCACTCCCGTGGGGCAGCAGAAGACTCCCTCTCAGGTGAACAGCAGCGTCCTAACAAGCACTTCCACCCCGATCACCAAGCACACCTCCCCCTCAGCCGGCTCGGCCAATCACGGGCCGCGGCAGAGGCCAGCAGGCGTGGCTAATCAGGGGGCAAAGCCACTGGTGACTGTTTCCTCAGCAACGGCTCCTCAGCTAGCACAGGTGCCGTCGTCCAGCGCCAGTCTGCTGGGTCCCGGCGCTCCGAACCTCCCGCTGAACTTTGGAATGCTGGGAGGAATCACTCCCGTCTCCCTGCCCTTCGCCTTCCCCGGCCTGCTGAACCTGCCCACTGTGACAGGAACTAGCGCTGGAGCTAACACTGCTAACCAAAGCAGCTCAGGATACAGCCTACAGCCCAATGTCAATCAAAGCCAGAGCGGGGATCTAAAGAGGAAGCTGTGATGTCACTCGGATGACGCTGGACTGTGATGTCACACTGAAGCACCTCGTACGCATGGACTGCAGGCTTAACCAATAAGAAAGAACAGctctttacctttttttttttttttttttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474308 lncRNA downstream 60 3584901 ~ 3585214 (-) True G399738
TU474294 lncRNA downstream 22913 3561148 ~ 3562361 (-) True G399727
XR_004577577.1 lncRNA downstream 69041 3514812 ~ 3516233 (-) True LOC117596450
TU474150 lncRNA downstream 153992 3414965 ~ 3431282 (-) True G399629
TU474142 lncRNA downstream 221678 3360674 ~ 3363596 (-) False LOC113534314
TU474312 lncRNA upstream 560 3601046 ~ 3635560 (-) True G399742
TU474360 lncRNA upstream 128453 3728939 ~ 3729385 (-) True G399783
TU474384 lncRNA upstream 172847 3773333 ~ 3773628 (-) True G399804
TU474386 lncRNA upstream 174819 3775305 ~ 3775700 (-) True G399806
TU474391 lncRNA upstream 181671 3782157 ~ 3782431 (-) True G399811
XM_026927743.2 mRNA downstream 95107 3488273 ~ 3490167 (-) True junbb
XM_034301543.1 mRNA downstream 120473 3433728 ~ 3464801 (-) False mast1b
XM_034301542.1 mRNA downstream 120473 3433728 ~ 3464801 (-) True mast1b
XM_026926985.2 mRNA downstream 157747 3419380 ~ 3427527 (-) True atg4db
XM_026927232.2 mRNA downstream 190584 3382114 ~ 3394690 (-) False evplb
XM_026927512.2 mRNA upstream 146996 3747482 ~ 3754120 (-) True LOC113534607
XM_026927404.2 mRNA upstream 194373 3794859 ~ 3809349 (-) False si:ch211-106h11.3
XM_026927403.2 mRNA upstream 194373 3794859 ~ 3809349 (-) True si:ch211-106h11.3
XM_026927753.2 mRNA upstream 222260 3822746 ~ 3825504 (-) True LOC113534792
XM_034301526.1 mRNA upstream 326767 3927253 ~ 3937638 (-) True rangap1a
XR_003403536.1 other downstream 223448 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 224320 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 273842 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 309319 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 523763 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1360616 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1986912 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2572502 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2771164 6371650 ~ 6374490 (-) False polr1h

Expression Profile