Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034301685.1 |
| length | 896 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 4 |
| gene id | si:ch211-81a5.8 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 12790796 ~ 12793315 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480163 | lncRNA | downstream | 104328 | 12686190 ~ 12686468 (-) | True | G404719 |
| XR_003403574.2 | lncRNA | downstream | 113150 | 12663011 ~ 12677646 (-) | True | LOC113535190 |
| TU480136 | lncRNA | downstream | 155583 | 12601632 ~ 12635213 (-) | True | G404692 |
| TU480131 | lncRNA | downstream | 199263 | 12589272 ~ 12591533 (-) | True | G404687 |
| TU480125 | lncRNA | downstream | 211990 | 12576532 ~ 12578806 (-) | True | G404682 |
| TU480264 | lncRNA | upstream | 24269 | 12817584 ~ 12877390 (-) | True | G404799 |
| TU480265 | lncRNA | upstream | 81496 | 12874811 ~ 12942105 (-) | False | G404799 |
| TU480293 | lncRNA | upstream | 120626 | 12913941 ~ 12923945 (-) | True | G404818 |
| TU480384 | lncRNA | upstream | 190398 | 12983713 ~ 12984373 (-) | True | G404896 |
| TU480388 | lncRNA | upstream | 198886 | 12992201 ~ 12993258 (-) | True | G404900 |
| XM_026928544.2 | mRNA | downstream | 6930 | 12771921 ~ 12783866 (-) | True | hcn3 |
| XM_026928395.2 | mRNA | downstream | 20115 | 12761791 ~ 12770681 (-) | False | ndufv1 |
| XM_026928396.2 | mRNA | downstream | 20207 | 12761712 ~ 12770589 (-) | True | ndufv1 |
| XM_034301472.1 | mRNA | downstream | 66281 | 12687762 ~ 12724515 (-) | True | kmt2ba |
| XM_026928404.2 | mRNA | downstream | 141477 | 12636850 ~ 12649319 (-) | True | si:ch211-288g17.3 |
| XM_034301683.1 | mRNA | upstream | 2416 | 12795731 ~ 12813429 (-) | True | clk2a |
| XM_026928254.2 | mRNA | upstream | 2416 | 12795731 ~ 12807646 (-) | False | clk2a |
| XM_026928253.2 | mRNA | upstream | 3530 | 12796845 ~ 12813429 (-) | False | clk2a |
| XM_034301684.1 | mRNA | upstream | 3530 | 12796845 ~ 12813429 (-) | False | clk2a |
| XM_026928313.2 | mRNA | upstream | 22756 | 12816071 ~ 12835472 (-) | True | setdb1a |
| trnav-cac_26 | other | downstream | 211145 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 211995 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 213136 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 213992 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| trnav-aac_24 | other | downstream | 215981 | 12574740 ~ 12574815 (-) | True | trnav-aac_24 |
| TU480489 | other | upstream | 347379 | 13140694 ~ 13141115 (-) | True | G404999 |
| TU480639 | other | upstream | 596649 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 762841 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 966446 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 966446 | 13759761 ~ 13761555 (-) | True | s100a11 |
