RNA id: XM_034301695.1


Basic Information

Item Value
RNA id XM_034301695.1
length 5567
RNA type mRNA
GC content 0.49
exon number 19
gene id ago3b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11911671 ~ 11938421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGACTTCCTGAGGTTGGTATTTCCGGTTGGGTCCCTCTGACTGTAGTGAGATGGTAAACCGGTAACAGGACTTAAAGGGACTCGGAGCGAGAAACCGGCTGGGAGTAAAATCTGTCCTTTCGGTCCAGGAGCTTCAAGTTTTTAGACACAGAcacatatttattcttttagctgccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcggGGGCGTTTCAGCCGCTGGTAGCTAgtagcaaagaaaaataaaaaaaagaaaaagaaggagaaaaagcaaagcagactgtgGGGAGTGTTCAGGAGGATTCATCTGGGAGCAGTTAGTTCCAGcggggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgcgtgctgGCAGGAGGACAGCGCTGAACCGGATGAACCCGAGGCCGAGCTGACCCTCAGCCAGCCGGACAGAGAAGACGTTCACCTGGGCTGAATCAGGAGCCACACCGCCGCCCCTCCGCCGCCCCTCCGCCGTCCTCCACACGGGTGCTGATCATCCAGAAGCCGGCCAGAATCCGGGCAGAGACCTCATGAATGGAAATCAGCACTACAGgagccGTTGGGGCTGCGCCCCTGTTCTCCGTGCCACGCAGGCCTGGCTATGGCACCATGGGCAAGCCCATCAAGCTGCTGGCCAACTGCTTTCAGGTGGACATCCCAAAGATGGACGTCTACCTGTACGAGGTGGACATCAAGCCAGAGAGATGTCCACGCCGAGTCAACAGGGAGGTTGTGGACTCCATGGTGCAGCATTTTAAAGTGACCATCTTTGGAGACAGAAGGCCAGTCTATGACGGCAAGAAGAGCCTGTATACAGCACACCCACTACCAGTCGCTGCAGGAGGAGTGGACCTAGATGTGACCTTGCCTGGAGAGGGAGGCAAGGATCGGCCCTTTAAAGTCTCTATCAAGTTTGTGTCCCTGGTTAGCTGGCACATGCTGCACGAGGTGCTGACTGGGCGGAGTACGCCCGAGCCTCTGGAGTTGGACAAGCCAATCAGCACCAACCCTGTGCACGCTGTAGACGTGGTGCTGCGCCACCTGCCCTCCATGAGGTACACTCCAGTAGGCCGgtccttcttctcctctcctgaAGGTTATGATCATCCGCTGGGAGGTGGCAGGGAGGTGTGGTTTGGGTTCCACCAATCAGTGAGGCCAGCTATGTGGAAGATGATGCTGAATATAGACGTGTCTGCTACTGCATTCTACAAAGCCCAGCCGGTGATCCAGTTCATGTGTGAGGTTCTGGACATCCATAACATTGATGAGCAGCCACGCCCTCTGACAGACTCCCACAGAGTCAAATTCACCAAAGAAATCAAAGGTCTGAAGGTGGAGGTGACACACTGCGGCACCATGAGGAGGAAGTACAGGGTGTGTAATGTCACCCGTCGGCCTGCCAGCCACCAAACGTTTCCGCTGCAACTGGAGAACGGGCAGACTGTGGAGAGAACAGTGGCGCAGTACTTCCGAGAGAAATACAACCTGCAGCTCAAATATCCCCACCTGCCCTGCCTGCAGGTGGGCCAGgagcagaaacacacatatCTGCCCCTAGAGGTGTGTAATATCGTAGCTGGGCAGCGCTGCATTAAGAAACTGACAGATAACCAAACCTCCACCATGATTAAAGCCACGGCTCGATCGGCACCAGACAGACAAGAGGAGATCAGCCGACTGGTGCGCAGTGCGAACTATGAGGCTGACCCGTTTGTGCAGGAGTTCCAGTTCCGCGTGAGGGATGAGATGGCCGAGGTGACCGGCCGCGTATTGCCTGCCCCCATGCTGCAGTACGGCGGCAGGaATCGCACAGTGGCCACTCCAAGCCATGGTGTATGGGACATGAGAGGGAAGCAGTTCCACACTGGTGTAGAAATTAAAATCTGGGCCATCGCCTGCTTTGCCACCCAGAGACAGTGCCGAGAGGAAATCCTCAAAAGCTTTACCGATCAGCTGCGTAAGATTTCAAAAGATGCTGGGATGCCTATTCAGGGCCAGCCGTGCTTCTGCAAGTACGCTCAGGGAGCAGACAGTGTAGAGCCTATGTTCAGACACCTGAAGAACACCTATGCTGGCCTGCAGCTCATCATCGTCATCCTGCCTGGGAAAACGCCCGTCTATGcGGAGGTGAAGCGTGTTGGAGACACTCTTCTCGGAATGGCCActcagtgtgtgcaggtgaagAACGTGGTGAAGACCTCGCCGCAGACGCTCTCCAACCTCTGCCTTAAGATCAACGTCAAGCTAGGTGGCATCAACAACATCCTGGTTCCTCATCAACGTCCGTCCGTCTTCCAGCAGCCAGTCATTTTCCTAGGTGCTGATGTCACTCATCCACCTGCAGGAGATGGCAAGAAGCCCTCCATCGCTGCGgtggtgggCAGCATGGACGCCCACCCGAGCCGCTACTGTGCCACGGTGCGTGTGCAGAGGCCCAGGCAGGAGATCATCCAGGACCTGGCCTCCATGGTCCGAGAGCTGCTCATCCAGTTCTACAAATCCACACGCTACAAACCCACACGCCTCATCTTTTACAGAGACGGAGTGTCCGAGGGACAGTTCCGACAGGTGCTGTATTATGAGCTGCTGGCCATTCGGGAAGCCTGTATAAGTCTGGAGAGAGAGTACCAACCAGGCATCACGTACATCGTCGTGCAAAAACGCCACCACACACGCCTTTTCTGCGCTGACCGTAACGAGAGGGTTGGACGGAGTGGAAACATTCCTGCCGGCACTACAGTTGACACAGACATCACCCATCCCTATGAGTTTGACTTTTACCTCTGCAGTCATGCTGGaatacagGGCACGAGCCGGCCCTCACACTACCATGTGCTGTGGGATGACAACTGCTTCACAGCCGATGAGTTCCAGCTGCTTACCTACCAGCTGTGCCACACATATGTACGCTGCACACGCTCCGTCTCCATCCCTGCGCCTGCCTACTATGCCCACCTAGTGGCCTTCCGTGCTCGCTACCACCTGGTCGACAAGGAGCATGACAGtGCGGAGGGCAGTCATGTATCAGGACAGAGTAATGGTCGTGACCCCCAAGCTCTGGCCAAAGCTGTGCAGATTCACCACGACACTCTGAGGACCATGTACTTTGCCTAGCCCCTCCTCCTCACCCACACTCACCTGTCACTCATATGACACCATGCACTGAAGCCTACTCCCCCGTCGCGTCAGCGACAAGCCCCGGGCCGCTCTGCTGCTAAAACGAACCAAACGCAACTACAACAAAGGGGAAGGGTGGGAATTAACACTGTTATGCAATagaatagtttaaaaaaaaaacagccaggcTTTTCTAAGAGCCTACTTCTTTCCTTTTCGTGTGTAGATCTGTGAGTCCTGAGAAAGGTATGGCATTTGTACACTTATTTATTAGCATTGAGtttatctgtgtctgtctgtctttttatcCGCATGGAAATCTTTTCATCTTTgattataaatcaaattaaattagcTGAAATTAGGGGAATTGATATCAGACATAACGGTCAAAGAATTTCACTCTCGTAAACAGAAGAGAGCAACACCACTGGAGGGCGGTGTGGTATTAAAGATCATACAGTAACGTTACCATGCTGtgattaagcaatatcgcactgaATATCAGCGCGGCTGTGGGATATACGCCGCCGGTAATcgcagccatgctgatattcagtgcaACAGCACGATTgcaagtgtgatattgcttttatacaacagttctataaagaaaaaattattatcgagtaactgacatttcagacacaatatggccaaatattttgggGTTGCGGtttgttgttttgatttttttgggattatttttctttttcttttttgctccgTCAACAAAAATAGTTCCCAACGAAGCCGCGGCTGGATAGACAGATCATAGGATAGGAGTGATAGAAACAGTGAGACGTCGCAGTGCTGTTGtagtaaatatcagcactctcaGAACGCCACTTGTTCAGTCAAATTagtggaactaactgttgtataaatttGGATTAAGATAGATAGAGTGATGCTAGGACATTGCCAAAGGATGCTGTGTTCTATTCCAACTAATGAAATCAATAAGAAATCAAATCAGTAAGAATATTTATGGGACTTGGcccatattcataaaatatcaTGATCTTGGCACAGTTTTGATAATGAACTCAGTTATCTTGACAGATCATTTCTTAATAATTCTCTTACTCTGAAATACTTGATGGGGGACATTTTTTGTCTCAGTCTCCATTTCCACCATTTGTACActtgcatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcactttaaACAAGGTTCAGAAGTAACTTCAATGAGTTACCCTATGCCGTCAGTCCTAAGACTTGGACATGTGCGTCAGTGCGCTGCCTGGAAAACATCTCTCAGTCTTGTATCTGTTCAAGattgtcccttttttttttctctcctgtatAAGCAGAGTGATACATTAGCTAAGAACTGCAGTTCTTATTACCTAAAGTACAACCGCTGAACATCCGTTAAACCCGACCCAAGGTCGGTAGAAAATTTCCCCTCAGAGGGTTGcgctgtgggtgtgtgtggttgtgggtgtgtgtcacTGTTCTTGTGCACTTTAAGTGCAATCATtggtgcgtgtgtgcgtgtgtgtgtgtgtgtggttgttgcCTTTGCCAGGTACTGAATAAGTATGTTGACACACCTTTGCTAATACAGCATTTTCTCAATGAACTTCAGATGTTAGGGAGAGAAGATGGTGGTTTTTTTCACATGGTTGCAAATATATAGAGAGCTTATAGTGTTGTTACTTTATACGCATTAAGGAGGGGTTAAATGTGTTGGGTGTTGTGGGAGTTAATTGTGTATTCACAGGGATTTGAGACAAAGTGCCTGGAAACACATTCTTAATGAACATCGGCCCATCCGAAGGTTTTCATGCTGTTAAACCTCATACTGCAGTTGTTGAAAAGCAGTGTTTTAGAagtgactttatttttaaaacgcATGAACAAAGGAACTAAGGTAGAGAGGAGTAAGCTGAAGAGACTACCCTGCACTCTGAACATTTTGGAGTCTTGAAACAAAGAgcatttctttcttgctttctctcctCCCCAGTGGACGAAAGCACATACTGCCGCACTGATGAGTGCACAAAGAATTTACCAAAAGTGATACAGCTACAGGCCCTTCTGGTCTactttttaagaatttttttttttaatagctggGCCAAAATTCTGACAGTGCAAATCAAAGATGGTAGGCACCAGATAGCGTTATGCAGCTTGTTACATGCTccagtatatggccaaaggtttgtgaacacctgattATCACACCCATGTAATGGTTCTTCCATAAACTCTTGCCACCATGTTGGAAGCACacttgtctagaatgtctttggatgctgtagcgttacaatttcccttcactggcacTAATGGACCCAaagctgttccagcatgacgatgcccctgtgcacaaagcgagctcca

Function

GO:

id name namespace
GO:0072091 regulation of stem cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0035198 miRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479573 lncRNA downstream 90245 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 121506 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 145904 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 215480 11691704 ~ 11696191 (-) False G403981
TU479303 lncRNA downstream 230675 11679255 ~ 11680996 (-) True G403982
TU479616 lncRNA upstream 32321 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 58649 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 61845 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 187036 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 207662 12146083 ~ 12147663 (-) False grin2da
XM_026928241.2 mRNA downstream 29162 11867632 ~ 11882509 (-) True lipea
XM_026928125.2 mRNA downstream 47904 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA downstream 47904 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA downstream 47904 11844553 ~ 11863767 (-) False LOC113535038
XM_026928122.2 mRNA downstream 47904 11844553 ~ 11863767 (-) True LOC113535038
XM_034301735.1 mRNA upstream 44773 11983194 ~ 11995992 (-) True usf2
XM_026928346.2 mRNA upstream 62595 12001016 ~ 12004480 (-) True LOC113535156
XM_034301698.1 mRNA upstream 62595 12001016 ~ 12004444 (-) False LOC113535156
XM_026928212.2 mRNA upstream 89800 12028221 ~ 12059395 (-) True slc2a3a
XM_034301514.1 mRNA upstream 134503 12072924 ~ 12084163 (-) True si:dkey-14o18.2
trnay-gua_21 other downstream 87708 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 89207 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 90707 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 92200 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 93697 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 492574 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 632043 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 633172 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 635178 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 636319 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile