RNA id: XM_034301699.1


Basic Information

Item Value
RNA id XM_034301699.1
length 2004
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC113534634
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4134338 ~ 4144544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAACTGGATAAACAGCATGGATCCACTGGATTTTCTAACTCATGAGGAGTTATTCAGTTTTTTACACTACAAGAAGACAGAGATCTCCTGCATGGAGGAACCACACACCTTCCTCACCCAGCTCCGAGACCACAACCTGGTCCCTGAGGATCTCTACCAGAAGGTAATAAAGATGAGAAGTGAGGAGAGAAGGCAGAATGGTGTGTATGAGATTTTGGACTGGCTGGAGAATGAACAAGGACAGAGAGTGAAACAGTTTTGgagttgtgtgtttcaggatcACATCCTGCAGAAATATCCCAATCTCCGCTTGCTCCAAAACAGCCTCCTTGATGATTCCTTTAGGAACTATGAAAAGCTTCCCAGTGCAGAGAAACCAAGCAGGAGTAAGGAAGttgagagaaaggaaaagaagcaAGAGCAAAAGAAGGGTgcaacaaagagaaagaaaagtggtgaagagacagatgaagaggaACCAGGCCCTTCCTCTGCGTCCAGCCAGAAGAAACCAGCCATGAAGCCCACTTTGTCCCTACCGTTAAAGAGTGGAGTGCTTCCTGTTACCTGTGGAGATAAAGAAGGCAGATTGTATCCCGACAAGCTTGCTAAAGGAGGCAAGTGTATTTTGTCCCAGGACCTCTGGTTCACTCCATGTGACTTTGAGAGATTTTCAGGAAGGGGAAATAGCAGGAACTGGAAAGTTACCATCCGCTGccaaaacacaacactgcagaAGCTCATAAAGgaggGTTATTTGCAGTGTCCACACACTTACAGAAGCTATGATCAGAAGAGAAAGACAGTTTCTTTTAGCTGTGTGGAAAGCTCCAGCCCTCAGTCAGTATCCAGTGTAGAGACAGATGAATCCAGTGAAGAACATGAAGAGTGGATAGAAGAAGAGGACagggaagaggaagaagaggaagaagacagCGAGACTGAATTTCAGGCTTTTGCTTTACCGGTCAGCTGTGGTTCTGTCAGTGggtttttatataaaagcagATTTGCAGGGTCACGCAGTAAGAGCATCCGCACAGAGGAGCGCTGGTTCACTCCTGAGGAGTTCGTAAGGCAGGAGTTAACTCTGACAGACGGACACTGGAAGAAAGATATACTGTGTCACGGCAAAACCCTTAACTACCTGGTGAAGAAGAAGATCCTGCGTAGCCATTCACTGGTGTGCCCCTGTCGTCTATGCTGTCCCAACACTAAGGATCAGGATAATGATGATGTGTGCTACATTTGTGACTCTGTGGGAAATCTGGTGTGTTGTGACCACTGTCCACGAGCTTTTCACCATCGCTGCCACTTACCAACTCTACAGGAAGACAACCTTggggATAATTGGATGTGTACTTTCTGTGTGTTAAAGACTAACCAGAGTTTGTGGATTCACATGAGCAGGGAAGGTGCTTTGAGCAGTCCTGTTTCTGGAAACAtcatgCGCTGTCAGtatttgctgttgcatttgtATAAGGCGGATAAACAGCGTGTGTTTACTGATGATCCTACCAAAAGTGTGCCGAGATACAGCAGTGTGATCCCCAAGCCCATGTGGCTAAACAGAGTGAAGACCAAACTGCAGAAAGACAAGTACAGAAAAGTGGGACAGTTTGTGCATGACATCAAACTCATCTTCAAGAACTGCCATACTTTTAACAGGgatAATAAGTATGGCATGATGGGAACCATAATGGAAAAGAAGTTTGAGAAGGAGTTTAACACCGTCTTTAATATCCAGTAGCATTTCTGCATCTTACTGGAACGTTTATCATCAAAAgtcatatattacattttaatatataatatgaaatttTTTCTTGGACAGAATTGTTTTACTCTGACAGCATCTGACTATTTAAGTGAACTTGTTATCTTCTGTAATCCTCCTCcttgtttattagtgttttaaGATACAGGTCTTTATATTATGGAACAATTATTATTTGAACCTCAGATACTTCAATTTTAAAATCCAGAATAaaacttatatttt

Function

GO: NA

KEGG:

id description
K24504 SP140; nuclear body protein Sp140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474609 lncRNA downstream 28011 4100097 ~ 4106327 (-) True G399990
TU474566 lncRNA downstream 68058 4009067 ~ 4066280 (-) True G399950
TU474561 lncRNA downstream 96407 3924966 ~ 4037931 (-) True G399945
TU474524 lncRNA downstream 216223 3916468 ~ 3918115 (-) True G399913
TU474550 lncRNA downstream 222991 3910640 ~ 3911347 (-) True G399935
TU474649 lncRNA upstream 8494 4153038 ~ 4154893 (-) False LOC113534684
TU474749 lncRNA upstream 46197 4190741 ~ 4276482 (-) True G400085
TU474784 lncRNA upstream 89859 4234403 ~ 4293157 (-) False G400112
TU474819 lncRNA upstream 136233 4280777 ~ 4281433 (-) True G400131
TU474821 lncRNA upstream 139505 4284049 ~ 4284393 (-) True G400133
XM_026927646.2 mRNA downstream 1416 4120397 ~ 4132922 (-) False LOC113534693
XM_026927645.2 mRNA downstream 1416 4120397 ~ 4132922 (-) True LOC113534693
XM_026927648.2 mRNA downstream 2916 4120397 ~ 4131422 (-) False LOC113534693
XM_034301488.1 mRNA downstream 16422 4106876 ~ 4117916 (-) False LOC113534511
XM_034301487.1 mRNA downstream 16422 4106876 ~ 4117916 (-) False LOC113534511
XM_034301460.1 mRNA upstream 6355 4150899 ~ 4159750 (-) True LOC113534684
XM_034301411.1 mRNA upstream 21780 4166324 ~ 4168560 (-) True LOC117596393
XM_034301461.1 mRNA upstream 25926 4170470 ~ 4175154 (-) True LOC117596407
XM_026927485.2 mRNA upstream 34567 4179111 ~ 4187724 (-) True LOC113534587
XM_026942401.2 mRNA upstream 151302 4295846 ~ 4338427 (-) False maptb
XR_003403516.2 other downstream 1416 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 772512 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 773384 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 822906 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 858383 3264713 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 816558 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1442854 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2028444 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2227106 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 2291443 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile