RNA id: XM_034301707.1


Basic Information

Item Value
RNA id XM_034301707.1
length 2968
RNA type mRNA
GC content 0.47
exon number 4
gene id sox10
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 677903 ~ 692387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagGAAAATGGCGGCTTTGTGCTGAAATGTGTGCACTGAGGGGAAAAAGACCTGAGTGGAAGTTTATGAAGGCACAAGAGCAGCTCTGTTCGGGAGAGGGAGGGCGGGAGCGCGCGCTACACcccgGTCAGTGTGAGTCCGCTGCTGAATGGACTCACCTTTACACAGCACCAGGAGAACCACATCAGGAACCTGGATGGACACATCATCCTAATAAAAGTGCATCAGGCTACAAACTGAGATAAATAGTCACTGTGCAGTAGACTTTTCTCCAGAGgaagaggtcagaggtcagagagagtgagaggttTACTCATCATTGTGGTGAATACATCAGATCACCTGGTGAGTGTAGAAGATGTCGGCTGAAGAACAGAGTCTGTCAGAGGTGGAGCTGAGTCCCGGGGTGTCGGATGATGGCGGCTCCGTGTCTCCGGGGCGGGCGGGTCACGCAGGAGACTCTCAGCTGGTGTCAGGAGGTGGGGCAGAGGAGGAAGGGGCGGGACTGTCTCATGCAGGAGTCTCGGTAAAATCAGACGAAGATGACGACCGCTTCCCCATCGGCATCCGCGAGGCGGTCAGTCAGGTGCTGAATGGCTATGATTGGACGCTAGTGCCCATGCCGGTGCGCGTCAACACGGGCAGCAAGAGCAAACCGCATGTCAAGAGGCCCATGAACGCCTTCATGGTGTGGGCTCAAGCCGCACGCCGCAAACTCGCCGACCAGTACCCTCATCTACACAACGCTGAGCTCAGCAAAACACTCGGCAAACTGTGGAGgctCCTGAATGAGAATGATAAGCGGCCGTTCATCGAGGAGGCGGAGCGTCTGAGGAAGCAGCATAAGAAAGATTATCCGGAGTATAAATACCAGCCCAGGAGACGGAAGAACGGGAAGCCGGGATCCAGTACCGACAGCGACGCCCACTCTGAAGGTGATGTCActcacagccaatcacattaCAAGAGCCTTCACCTGGAGGCGGGGCATGGTGCTGGGGCAGGGTCTCCTCTCACTGatggacatcacacacacccagcagGCTCCAACCACAGCCCCCCGACTCCTCCCACTACTCCCAAAACAGAGCACCAGGGTGGCAAATCaggagaggggaagagagagggTGGGGCCAGAGGGCTGGGAGTGGGGGCAGATGGAAGCTCTGCCTCTTCAtcgtcttcctcttcctcaaAACCACACCTGGATTTCGTGAACGTGGACATCGGCGAGATCAGCCATGAAGTGATGGCCAACATGGAGCCATTTGATGTCAACGAGTTTGACCAGTACCTGCCTCCTAATGGGCACCACCCATCAGGCTCAGGCTCCGCCTCCTGCCCAGCCCCATCCCCTTCTCCTTACTCCTACTGGCTGTCGAAACAGCAGCTAAGCTCAGAAGGTGGGAAAACACAGATCAAGAGCGAGACGCATTTCTCGGGTAATGCTGATGCttcagtgggcggggcttccacaTCAGGGGGTGGAGCATCAGCTCATGTCACATACACACCTCTCAGCCTGCCTcattatggctctgctttccccTCTTTGGCCTCCAGGGCAGCACCGTTTGCCGAATACGGAGATCACCAAGCATCTGGatcatattacacacactcgGGCCAATCAGGGCTTTACTCCGCCTTCTCCTACATGAGCTCCGCCCAGAGGCCCATTTACACTGCTATCACTGACCCTGCCCCTGGGAATAGCCCCACCCACTGGGAACAGCCTGTGTATACCACTCTGACCCGgccgtaacacacacacaagagaaagacatgatgatgatgatgatgatgacgatgatgatgacgacgatgatgatgatgacgatgatgatgatgacaataacaataatgatttAGTCTCAGACACACAGATCACACATTTAATGGGGAAAAAGATTTGACAGCCCACTAGCAACACACATATATTTGTCTAACTGTCATTGTGGCTGATCCCATACAGGTGGGCGTGGCCTCctgatgtgcacacacacacacacacacacacacacacacacacacacaattagacAGGACATTTTTCGTTGCTCATGTGAAATGGAATTTGAGTGTCAGTGTTTCTGAAGGACATTTTTACCTGCACATTTAAACAtcaaactttattattattattattattattattattattattattattattattatggaataATAATTCTTTCTTATTAACCAAAACGAGGccattttctttgttgttgttgttagaaTCTTTGACTGTTGATGGTTTTTGTCATCATGACCACCACTGAACTGCATTTTGGTGATGAAAtgagtttgtgtatatattttagtGTTAGCGTGGTGGATCGATGTGTCGATATGATAACAACACTGTAACACTTTTCATTTCCTAGACGACTTTGCGTTGTTTTATCGTAACCAGCGAGAGAGGATGTGAACGCCAACCACAAGTGCCTACAGCACACTGAAACTCAtttagaaaatgtttgtgtgattttttctttcaaatttataatgttaaaatgaaattttctttcagaaatgacagagaaaCAGCTAGAGAATTCATGAGGGGTGGAGCTTGTACATGGTGGGCGGAGCAACCACTCACATAATGTGCCTTCTTCTACTCTGACTACGaacatttaatgatttattacatGGACATACTGTTAATATTTTCactctcttcttttttatttcttttctaattttaacTTTAGTGTTCTTTCATCTATATTCagtagtattatatatatattaaaaatatacaaaaactaTACAAAGTGTTAGAGAATCTACATGCAGTAGGTGgagcttgttttatttatattgttgtttttattctctgttttccttttaAGTGACTTTTTTGTGTTACACGTTGTTTTGTGTACGAGTTTTTTGTTAATGTGTTCCAGTAGAGACTAACGACACACATACTAAATAAAACTCCGTCCGCTTttctat

Function

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0014044 Schwann cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0048709 oligodendrocyte differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472461 lncRNA downstream 33894 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 81914 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 260584 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 370494 307118 ~ 307409 (-) True G398158
XR_004577546.1 lncRNA downstream 372030 305279 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 151641 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 157450 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 160155 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 188730 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 192894 883189 ~ 925071 (-) True G398403
XM_034301708.1 mRNA downstream 16840 652498 ~ 661063 (-) True LOC117595703
XM_034301443.1 mRNA downstream 31952 644048 ~ 645951 (-) True LOC113547081
XM_026911521.2 mRNA downstream 89251 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA downstream 89251 571701 ~ 588652 (-) True LOC113525082
XM_026911534.2 mRNA downstream 116866 528261 ~ 561037 (-) True LOC113525090
XM_026939079.2 mRNA upstream 36655 726950 ~ 734134 (-) True LOC113541895
XM_026915926.2 mRNA upstream 57615 747910 ~ 751320 (-) True LOC113527787
XM_034301444.1 mRNA upstream 65706 756001 ~ 765127 (-) True LOC113527126
XM_026914683.2 mRNA upstream 143597 833892 ~ 839441 (-) False LOC113527139
XM_034301595.1 mRNA upstream 143597 833892 ~ 839441 (-) False LOC113527139
TU472265 other downstream 195895 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 352358 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 367248 310583 ~ 310655 (-) True trnar-ccu_18
TU472485 other upstream 49948 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 195407 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 209233 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 217330 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 219774 910069 ~ 910223 (-) True LOC117596482

Expression Profile