RNA id: XM_034301708.1


Basic Information

Item Value
RNA id XM_034301708.1
length 3260
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC117595703
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 652498 ~ 661063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGCTTTCTACATCTACATAGATCACGGTGGCGCGTAGTCGTTTCCGGGAAGgagaagatttaaaaattaaCAGGGATTTTAACGCGGAAAATGTCGACTCCAGGAGAAGGGTGAAGAGAAGAAACCATCAGGAAGAGCCAGTCCTGATTTAGACCGTCCAAactTGGGAAAGGGTGCAGAGAAGAAACCATCAGGAAGAACCAGTCCTGATTTAGACCGTCCAAACATGTCCACGTTGAGGATGGTGCTGGTGGGAAAAACTGGAGCTGGGAAAAGTTCCTCAGGAAACACCATTCTGGGCAGGAAAGCCTTCAGAGCTGCCAAAAGTGGATCATCTATAACTAAAGAGTGCTGGAAGGTGACTGGAGAAGTGGCTGACACCCTGGTCGTGGTGGATAATCCAGGTCTTTTTGATGACACACTTTCTGAGAAAGACTTGAAAAAAGAGATGTGTAAGTGCATTAACATGATGGCTCCAGGACCCCATGCCATCATCCTGGTGATTCAGCTTGGCCCCTTCATGGAGGAGGAACTTCTCGCAGTGGAGAAGATCAGAGCTCTTTTTGGAGAAGAAGCAGATAAATACACCATGGTCCTCTTCACACATGCAGACCAACTCACAGGAACCATTGAGGAACATCTGCTTGAGGCTGGAGGGAAACTCAAAGCCCTGATAGATGTATTTGGAGGGAGGTATCACGTGTTTGACAACACAAGAATGGATGATCGGGCTCAGGTTCTGGAGTTTCTGGACAAAGTGGAAAGCATGATGTCTGCAAACGGGGGTGAACACTACACCAGCGCCATGTTTCAGAATGTGGAGGAGAAgctgaaggagaaggaggaggagttaaAGAAACACTATACAGAATTAGAGAGAAAATTAACATCTCAGTACAACGAGGAAATCAGAAAATTACAGGAGACAATTGAAAAGCTAAAGgaatcagagggaaaaaaagagaaaaggattGAACAGTTGAAAGAGTTAATTAAAAAGAAGGATAGGCAACTGAGAGAATACAGGAGATTCTTTAATGCAAGGCGCAGGAATGTGAGACTGGAGGCAGAACAAACAGACGTTGATGAAAACATACCTGTGGCCGTGTGTGCCAGGTTAAGAAGCCTTCGTCTTTAAAAGCAGAATATTTTTGTGGACTGAACGCATGCCGTAaccgtgtgtgagtgtgctgttCAGCCTAACAGCCTTCTGCTCATTTCACGTCAGTGTGGATATTCAGAGGTGAGTTAAGCATGCGGAGAGAAGAATTTTTTCATACCAAAATATGACTTCACGCTATATGACTTTAGCATGATTGTTACTGGTATTTTAACCTCAGGCCTTCTGAGACATTGTTTTGCCACTCTATCTGCCATTTCATTCCCATCAGCACCACGTGCACTGAAACCccaaaataaatcacattcaCATTATGTTCCAGCACAAGATCTTGTCTACACCTTTATTCTCCTGACTGGAGTCTCTGATGGACAGATAAGGAATTTGAGCTGATCACTGGCTGTACTGGGCAAACCTCCTCAGCCCCTGCAGCGCAGTGAGTGTGAGTTTATTTGGGAGCAGTGACTGGACTGCCAAACCATCTGATAATCTTTTTCAGAAGATGAAACTCAGGCTCATATGCTGCAGCTGCTGTGAGCCATGTGTATCAATTTCCAAGAAACCACAATACCACTGTTGTTATTACcatcttttttttgctctgctTTCTAAAGGAGGTGCAGTCAAACTACTCTTTTATTAATATAGCTAAATCAGCTACTTTGTCGAACTGAGGAAAATCAACTGTGTCATTTTCAATGTATTGTGCACAAAATACTGGGAAAAAGAAACTTCtccctccttcaattctgtgtgtttatttatcagggcctgaATAACACTTGTGTGTTCCACActaacttctataaacaaactaataatctcaccaaaaatacacaacagatttcaacatgcagttattttttccccaaaaaataaaccaacattcagaaaccaggtgggaaaataAAGGCACCCTATAACTCAGTAACATgcagaaccacctttagcagcaGTAACCTGAAGTAAatgtttctgtaggagtttatgaGTCTCTCACATGTTCTGGAGAAATCTaacccactcttctttgcagcaTCGCTTCAGTTCAGTGGTGTTTGAAGGCATTCGTTAATGCACAGCTCTCTGAAGATCCCTCCAcggcatctcaatggggttgaggtctggactttcaCTTGGCCGTTCCAAcaccatgatttttttcttcttcagccattcagatgttggtttgctggtgtgcttgggatcattgtcctccTGTTCACCACACAACTGTtgtttaggccctgataaataaaaacagaattgaaggagggggtattttctttttcccatgactgtacatGTACTTACTACAGAGTATGCcgtattttgtttttctatttgtaaATCACTCTTAGTAATAAACAGTTAACATTAATGAACTGTAAAACAACGATAATCAAATACAGTGatctacattatatggccaaatgtatgtggaaacctgaccatctcACCTATATGAGCTtggtgaacatcccattccaaaagcttgggcattaatatggagttgccCCGCTTTCTGGCAGAAAAAGGTCCAGATCATTATCCCTCCTCCACGACACTTTACTGCTGGCACTCTGCTTTCTGGCCTTCTGGCATCCATCAATCCCAGATTCATGGTCTCCCACTTCATGGCTAAGCAGTTGTTGCTCCTAGACGCTTCCatttcacacaaaataaaacttaCCGTGAACTGACTTGTGGCAAAGTCAGTGGCATCCCATGACAGTGTCACATTCAGTATGACCCATGCTACTGCCAGTGTTAatctgtggagatggcatggctATGTGCTTGATCTTATGGACCTGTTAGCAATGGGTATAGCTGAAACACATGAACTCAGTCATTAGGAGGGGGTgaacatacttttggctgtataatGTATGAGTATCATGGCTAATAGGagtgtgatgatggtggtgcCTCAGTACAATACATTTTCAGTAGAGCAGAAATAAGCAGTGCCTGTATATGtgccttaggtttccatttCCAGTGGATTCAAACATTTATACTATAAAATAAAGCGACTGAAACTTAATGATGAGTGTTTGTGACATTTAgcagtgtataaaaatgtaaacaaaattacaattttgcataacaaaattaaaacatttaaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472461 lncRNA downstream 8489 642402 ~ 644009 (-) True G398338
TU472424 lncRNA downstream 56509 595118 ~ 595989 (-) True G398304
XR_004577543.1 lncRNA downstream 235179 414465 ~ 417319 (-) True LOC117596419
TU472224 lncRNA downstream 345089 307118 ~ 307409 (-) True G398158
XR_004577546.1 lncRNA downstream 346625 305279 ~ 305873 (-) False LOC117596423
TU472520 lncRNA upstream 180873 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 186682 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 189387 850450 ~ 851339 (-) True G398395
TU472497 lncRNA upstream 217962 879025 ~ 881892 (-) True G398371
TU472530 lncRNA upstream 222126 883189 ~ 925071 (-) True G398403
XM_034301443.1 mRNA downstream 6547 644048 ~ 645951 (-) True LOC113547081
XM_026911521.2 mRNA downstream 63846 571701 ~ 588652 (-) False LOC113525082
XM_026911520.2 mRNA downstream 63846 571701 ~ 588652 (-) True LOC113525082
XM_026911534.2 mRNA downstream 91461 528261 ~ 561037 (-) True LOC113525090
XM_034301441.1 mRNA downstream 170566 473750 ~ 481932 (-) True LOC117596396
XM_034301706.1 mRNA upstream 16840 677903 ~ 692387 (-) True sox10
XM_034301707.1 mRNA upstream 16840 677903 ~ 690295 (-) False sox10
XM_026939079.2 mRNA upstream 65887 726950 ~ 734134 (-) True LOC113541895
XM_026915926.2 mRNA upstream 86847 747910 ~ 751320 (-) True LOC113527787
XM_034301444.1 mRNA upstream 94938 756001 ~ 765127 (-) True LOC113527126
TU472265 other downstream 170490 474566 ~ 482008 (-) False LOC117596396
TU472228 other downstream 326953 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 341843 310583 ~ 310655 (-) True trnar-ccu_18
TU472485 other upstream 79180 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 224639 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 238465 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 246562 907625 ~ 907779 (-) True LOC117596481
XR_004577595.1 other upstream 249006 910069 ~ 910223 (-) True LOC117596482

Expression Profile