RNA id: XM_034301717.1


Basic Information

Item Value
RNA id XM_034301717.1
length 2795
RNA type mRNA
GC content 0.44
exon number 10
gene id scamp3
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12915978 ~ 12926264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACTGggatcactgagatcACTGGGATCACTGGGATCACTGGGACAAGCTCACTCTGCTCTCCAGCTGCACATTAACCAGACATGTCGAAGTACACAAGTTTCCCTGAGCCCACTGAGGATCACAATCCATTCCAGGATCCTTCAGTGACTCAACACAGCGGCAGCTCAGACTATCCCACACTGGACCTGTACAATCCCTTCGACAACAGGGCGAGTGGGcCTCCGCCTCCTTACGAGGTCGCGCCACCAACCGCACCACCAACCCTCCCACCTCAGACTCTGCCTAGCAGGACTACGCCCACAGAACCCAGGAATTATGGATCCTACAGCACACAGCAATCTGCAGTGAACGCCACAACAGCTGACTTGCTGAGGAAGCAGGAGGAGTTGGAGAGGAAAGCAAGGGAGctggagaggagggagagagagctcGACTCCCAAAGCCGCGGCACGGGATCCACCTCTCAGAAGAATTGGCCTCCATTGCCATCTTTCTGTCCGGTGGGTCCGTGCTTCTATCATGACATTAACGTGGAGATCAGCCAGGGCTTTCAGCGCATCGTCACCATCATGTACTACTACTGGATGTGTTCAGCTTGCACTCTGGTCTTCAACTTCATGTCCTGCCTTGCTATGTTTTGTGTGGACACTACTAGTGGTGTAGGCTTTGGCCTAGCCATCCTCTGGCTTCTGCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTATAGAGCATTCAGGAGTGATAGTTCCTTCAACTTCTTTgtgttcttcttcatcttcttcgtCCAAGTGGTGGTGTACATCCTTATGACTATTGGCATTCCCGGCTGGGGCTTCAGTGGCTGGATAGTGGGTCTTGCTGCATTAAAGACAAATACTGCAGTTGGGGTGATCATGCTCTTGAATGCATTGGTCTTCACTGCTCAGGCTGCCATGGGTGTGGTTCTGCTCAAGAAGGTCCACTCTCTCTACAGGCAGACCGGCGCCAGCTTCCAGAAGGCCCAGGCAGAGTTTGCCACTGGGGTGCTTTCAAACGACGCCGTGCGCCAAGCAGCCGTGAACGCCACCGCCTCGGCAGCGCAAGGGGCCTTCACCGGAGCACGTTAGACTGAAAGGCAGCATGAATGGGGGGCTGGGGAGAAACTGAGGATGAGTATGAGCTCAAAAAGAGTCTACAGGTATAGAGAGAATTCTGTATATTTCGATACTTGCAGTCCGACACTGTTTCGAAACATACACTAGGCCCTTTTGCTTGTGTGGGAGGAATGGATACAATAGATCAAGGCAAAATTTAAttacttgatgtttttttttttgttagcctTATAATTAACCTTGTTTATCATACCCTTGACCACATGGCTGTCATTACCGATCGGCAGAACCATAAACTAGGTGAGAGTGGCAGTTTTTGGgatttgtttctgttctttattgtcattgtgaaTGATAAATTGATTAGGAAAGCGCTGCCAAGTAGATTAAACTGCACCACACaggtatctctctctctatctgtctcattctctctctctctgtctcattctctctccccCTCATTAGTATATAAATGCTGcgtaaatgttaatgttaaatcgCAAGCTGTCCACACAGATCTGGCCACTCCAAgtttgaaaaaggaaaaaaaaacatgatattttttttttgaaagtcaTAGGACAGTTTCCTATTTTCTACTGTAGGAAATGTAATGGTTTGTTAACCTGCTTGAATAAAGTGTGAAGCACTTCAGAGGCATCAGAAATTGAATAtgtcataattcataatttatgcaaaaaaataaatctttgtaTCCAGCAGTTACAGTTCGAAATAAAACgatctacagtatataatgcTCCCTACAGTTGtggaaacaaatgaaaagaaacataTAAGATAAGTGTGTGCTAAAGGATAATAATACTGATACTAGCCTATATTAAAGTTGCTTTATAATCTTGCTCTGTAATCTAATACTGTGTGCCAAAATTCCCTGGGCTCTATGTAAAAACAGTCAGGAGAAAGATGAATTATTTTCGCCTCTGTTTAAATCCTCTAAATCACTTTATTTGTAAAAGATTAGTGGCTTCAGTTGAACGTAACGCTGTCGGGCTTATGCCTCGCTGCCGCGATTACAAACATAGAGCCTCACGGTTCCCAGTTTTcgtgtttattttgaaatgtcattCTGCATGGTGAATTTCCTTTTCCCAGTGTACATTTGTGTTGTTTGAAATCTCTCAGTCTTAAAACATGTGTGCCCAAGAGACCTCATGATCCAGCGCCTGTTCATTGCTTACTGTCCTGAAAGAATAATAagtgtaaaatgtatatattatagaCAAGTCTGAATTAACACACCTTTAAAATCCTTCATTCATACCTTCATTCTGTCATTTTGTGAATGAAACAGTTCCAGACTGTTAAGACTAAAGCAAAGTGCCAGCAGCCATCATCCAGGATCTTATCGTTCAGTGATTtgtatgaaaatgtataaatgctACTTAACTGTCTAACATTCTGTCCTCCTCTTGTATTTTCCTACGATCGCCAGTCTACGTTTTTTGCACAATGCCAAATGTATTTATCCAgttatgtgttattttgttcTCTCGGTGTTGTGGgctacaggttttttttattttacctgcGCTAACACACTTGATCCAAGCCTTCCTGTTTTGATAAAGGTATGTGAGATCAGGTGGACACTAATATGTGCTGCTTGTCATGTTTGTCtgtggtgtttatttgttttaataaaattaataaatttga

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480264 lncRNA downstream 38588 12817584 ~ 12877390 (-) True G404799
TU480163 lncRNA downstream 229510 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 238332 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 280765 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 324445 12589272 ~ 12591533 (-) True G404687
TU480384 lncRNA upstream 57476 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 65964 12992201 ~ 12993258 (-) True G404900
TU480392 lncRNA upstream 73006 12999243 ~ 13002077 (-) True G404904
TU480404 lncRNA upstream 92356 13018593 ~ 13021304 (-) True G404916
TU480387 lncRNA upstream 96507 13022744 ~ 13025118 (-) True G404899
XM_034301790.1 mRNA downstream 16018 12860573 ~ 12899960 (-) False ash1l
XM_026928440.2 mRNA downstream 16018 12860573 ~ 12899960 (-) False ash1l
XM_026928439.2 mRNA downstream 16018 12860573 ~ 12899960 (-) True ash1l
XM_026928441.2 mRNA downstream 16019 12860573 ~ 12899959 (-) False ash1l
XM_034301516.1 mRNA downstream 60486 12838204 ~ 12855492 (-) False lrrc71
XM_034301498.1 mRNA upstream 10987 12937224 ~ 12946377 (-) True crabp2b
XM_034301473.1 mRNA upstream 161250 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 463679 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 482820 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 482820 13409057 ~ 13443086 (-) True trim46b
trnav-cac_26 other downstream 336327 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 337177 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 338318 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 339174 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 341163 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 214457 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 463727 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 629919 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 833524 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 833524 13759761 ~ 13761555 (-) True s100a11

Expression Profile