RNA id: XM_034301729.1


Basic Information

Item Value
RNA id XM_034301729.1
length 1868
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC117596454
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1962730 ~ 1970432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGTCATCTCTTGTCATCATCCTTGTATCAGtacgtaagtgtgtgtgtgtgtgtgtgtgtctgtatgaaGGTGCGAGCTCGGATCTTGAAACTTTACACAGGGATTCAGAAACATGACAGAGTCTgaagACAAGTTAGGTGAATACAACATGACCATGGCTCTGCAAAACAACTCATACACAGCAgtttcccGTCCAGATTGGCTGTTGTACGTGGTTCCTTCTATTGCCTTTGTACTTGGAGTGTTCCTATTCTCAGTGGTCTTCAGAACACAGCGtcacagagagaAAGCATTTCGGCGAGTCGCTGCACTAAAGACCATCATGAACGCAACCTCACCAGGACACACATACGCAAGtcaAGGACCCATGGGAGCAGAGAATAAGGATTTCAGCAAACTGCAGAACTCCAGCGAAACTCAAGGAAACCTTACAAAACAAGAGGCCCAGTCTTATGAGAACGTTACAACGGTAATCTACAGTAATGAGGATAAAGTCAACTACTGCGTCCGTCAGGATGAAGATTATGTCACTCCTGATGCAGCAGATGAAGTGACAGAACCCGAAAAGACCACCTACCTTCATTCACATCACAACCTTACAGACAccgATGGAGAGTCATATGAAAACATGGACGGGTGTGTGTATGCTCATCCTCGCCAACCCACACTAAAGAATGCACTCAGCACTGAGGACGATGatTATATTAATCCTGAtgaagaggaaaaacacaacctggaacagacagatacagagTCCTATGAGAACATGAATGGCTCAGTATGTCCCAACACAGACGcacaaaccaacacacacactgtggatgAAGgcTGGTATGAGTGCATGGACAGAAGACAAAGAAGCGAGAAGCACACATAATACAGGATATTAGTGAGGGGTGAAAGGAaaccaacccacacacacacacacacacacacacacacacacacatacaatttaTTCATATCCAATAAGCAAGTAGTAATACAGGACATACATAATAGAGATcaatacagaatacagaaaaatacatcatcttACAGTTAAAACATGGACAGTATCAAGATTATCATGAATATAAATAGCAGCTCTTCACTATATATATGACGGCTGCCAGTGATAGCAGACACTGAACAGTATTTTGCTAGCTGTTTAGCTCTCCTTTTAGGCAGCGCTAGCAGCTGTAAGCCCCTGATGACTAGTCTGTGGACGTGTCCTAGGCTGCTGTATATGAAGACcaaaagtctacacttgtagCTGAGCTCTGAGATGTTCCTCAGGAGCAGTTGGTACTTGATAACCTTAGTCATGAAGGTTTCCTCGAGGCCTGTAAGATAAAATATCTGTCTGAACTCTtcatttacaacaacaacatctgGGTTATTAGCAGAGAGATTtgcaaaaatgaatgaatcattgttACGGAAGATGTACAATGTACAAGAAGGCTTGTCCAGTTTCACAGAAGAAGCTAAATGGATTGATATTTCTTTCGTTATGAAGTCTACTATTCTATTCTAAACCATCTATACAGGAATATTTCGACgtctgtacgcatataaacctCGTATTCGGAATacggctgcaacccgaataagGACCTTAAacggaatactgatgtgcatgtaaacgtagccattgAGTATAATGTTAGTGTGTAAGTGTCAAGTGTGTGAAGAGAAATACTGCCCTTTACTGGCGTGATGgaagatgaataaaatattcagcaTTTGTTCAGGCTAGCGTCAGTTAAGAATCCATTCAGGAattagctgtgttttattttaggaCCATGACACAGGAACTTCATTATAAACCATGCtgtaattttgtaaaatatcaTAATTCTGTTGTACGacttgtaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473276 lncRNA downstream 3169 1956046 ~ 1959562 (-) True G398925
TU473273 lncRNA downstream 10547 1951921 ~ 1952184 (-) True G398922
XR_004577585.1 lncRNA downstream 86311 1875199 ~ 1876420 (-) True LOC117596467
TU473234 lncRNA downstream 97888 1832816 ~ 1864843 (-) False G398890
TU473238 lncRNA downstream 127435 1825597 ~ 1835296 (-) False G398890
TU473294 lncRNA upstream 27654 1998086 ~ 1998681 (-) True G398942
TU473287 lncRNA upstream 60736 2031168 ~ 2032632 (-) True G398935
TU473308 lncRNA upstream 69869 2040301 ~ 2040923 (-) True G398953
TU473380 lncRNA upstream 292172 2262604 ~ 2268036 (-) False G399016
TU473379 lncRNA upstream 295874 2266306 ~ 2268036 (-) False G399016
XM_034301809.1 mRNA downstream 11635 1934506 ~ 1951096 (-) False hspbp1
XM_034301808.1 mRNA downstream 11635 1934506 ~ 1951096 (-) True hspbp1
XM_026910212.2 mRNA downstream 30605 1916290 ~ 1932126 (-) False LOC113524085
XM_026910211.2 mRNA downstream 30605 1916290 ~ 1932126 (-) True LOC113524085
XM_026910159.2 mRNA downstream 87723 1872919 ~ 1875008 (-) True LOC113524042
XM_034301787.1 mRNA upstream 8826 1979258 ~ 1982556 (-) True jmjd8
XM_026910199.2 mRNA upstream 33190 2003622 ~ 2007277 (-) True mrps7
XM_034301693.1 mRNA upstream 37574 2008006 ~ 2011992 (-) True tmem220
XM_034301671.1 mRNA upstream 384477 2354909 ~ 2365507 (-) True mmd
XM_026910059.2 mRNA upstream 426984 2397416 ~ 2402161 (-) True tmem100a
TU473235 other downstream 81673 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 97888 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 371002 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 500661 1461324 ~ 1462070 (-) False LOC117596459
trnad-guc_31 other upstream 277728 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 401864 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 991281 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1198902 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 1232858 3203290 ~ 3275955 (-) False G399489

Expression Profile