RNA id: XM_034301730.1


Basic Information

Item Value
RNA id XM_034301730.1
length 799
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC113535306
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13548417 ~ 13549215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGTTGATAAAGGTGGGAAACAGAAGGACGCTGAGGACTGTTCAGCATTTCTACTGCACTGTTACAAGAGGAGTAATGGCTTTAATCGGAAAATTAAGGCTCGCAGAGTCCCGCTGGAAAGGTTTGGTTAAAAGGACTCAGAGGAATGGTCTGTGCCACACCTTCTACAGCCCGAACGGGGATGAGTACACCGGAGAGTGGCGGGGTAACCTGAGGCATGGGCAGGGAACTCAGGTGTGGAAGAGAGCCAGAGCCATGTATGAAGGCGAGTGGAAACGGGATGCGCGAGACGGTTACGGGAAGCTCTACAAACTGCAGCCGTCTACTAAAGAATATTTAAGAGTTTATTCAGGGACCTGGAGGAACGATAAGAAGGAGGGGTTTGGGAGATGTTTCTACAGCTCGTCAGCGCGATATGAGGGGCAGTGGGTGGAGAATGAGAGGAGCGGATGGGGGAGGATGAGGTAtgagaatggagatgtgtatgAAGGAGAGTGGCTCAGGGATAAACCCCACGGCCAGGGCGTGCTGGCGCTCAGGAACGGGAACAGCTATCAGGGCTCCATGAAGGACGGGAAGAAACATGGACACGGACGCTTTGTCTACAGGGACAGGGGTCAGGTGTACCAGGGCTTCTGGGTAGATGATGCGCTGAAGTGTGGGACGGTGTGTGAGTGCGAcaggaagaaaacacacacaccacagctgcACCCTTTACCCCCGGTGATGCTGCAGGATGTTCAGGCTGTACTGAAGGAGGCACGCGACCAGTTCAAAAACAGGATTAATGCACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480772 lncRNA downstream 4012 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 93620 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 181641 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 329937 13218279 ~ 13218480 (-) True G405032
TU480487 lncRNA downstream 407762 13140420 ~ 13140655 (-) True G404997
XR_003403560.2 lncRNA upstream 10674 13559889 ~ 13563949 (-) True LOC113535067
TU480893 lncRNA upstream 51812 13601027 ~ 13605892 (-) True G405353
TU480913 lncRNA upstream 106190 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 186321 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 259268 13808483 ~ 13814892 (-) True G405419
XM_026928592.2 mRNA downstream 3912 13542035 ~ 13544505 (-) True rps27.1
XM_034301491.1 mRNA downstream 22317 13489949 ~ 13526100 (-) True chrna11
XM_034301492.1 mRNA downstream 105331 13412968 ~ 13443086 (-) False trim46b
XM_026928305.2 mRNA upstream 6943 13556158 ~ 13558631 (-) True cks1b
XM_034301479.1 mRNA upstream 26469 13575684 ~ 13586550 (-) True aqp10b
XM_026928604.2 mRNA upstream 41824 13591039 ~ 13599620 (-) True hax1
XM_034301811.1 mRNA upstream 54112 13603327 ~ 13638125 (-) False ubap2l
XM_034301812.1 mRNA upstream 54112 13603327 ~ 13637977 (-) False ubap2l
TU480639 other downstream 155682 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 407302 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 968766 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 969616 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 970757 12577588 ~ 12577660 (-) True trnav-cac_25
TU480779 other upstream 6941 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 210546 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 210546 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 532157 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 565404 14114619 ~ 14119658 (-) True G405588

Expression Profile