RNA id: XM_034301734.1


Basic Information

Item Value
RNA id XM_034301734.1
length 3116
RNA type mRNA
GC content 0.46
exon number 10
gene id ctdp1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14622681 ~ 14637333 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtctgtgtgcacgTGTTTTGAGAGCAGCAAGCAGAGCAGCTTGGCCGAGAAGACCAGAAGAGGCTCCACAGAAACAGGAAGCTGGTtctcatggtggatctggaccAGACTCTAATCCACACCACAGAGCAGCACTGTCAGCACATGTCTACCAAAGGAATTTTCCACTTCCAACTGGGGAGAGGGGAGCCCATGCTGCACACGCGCCTCAGGCCTTACTGCAAAGAGTTCCTGGAGAAGATTTCCAAGATGTATGAACTGCATGTGTTTACTTTCGGAAGTCGCCTCTATGCACACACCATTGCAGGCTTTTTGGATCCTGAAAAGAAACTTTTCTCACATAGAATCCTGTCTAGAGATGAGTGCATTGACCCGTTCTCCAAGACAGGAAATCTGAGAAATTTGTTCCCATGTGGCGACTCCATGGTGTGCATCATTGACGATAGAGAGGATGTGTGGAAGTTTGCTCCTAACCTCATTACTGTGAAGAAGTATGTCTACTTCAAGGGAACGGGTGACATCAATGCCCCACCCGGCTCACGAGAGGCCCAGCtggcaaaaaaaagtgcagGTAGCCTGGCGAGTCAAACTGTAGAGAACACCAGCACATCTGGATCATCAGCCGATGAGGGGAAGAATAACGGCCTCCGGAAACAGGACAAGGATAAAAAGTCTCTGCAGGACGAAATGTCAGTCTGTGTCCCTGACATTCAAGGAGCATCAGATAGCCAGAGAACTTCTCCTGATGGAAAGAGGACAGAAAAACCACATTTGAGTAATAAATCTGATATTAAAGTAGAGGAGTTGGGAGGCTTGGATAGGACGAAGCAGTCTGGTGAGACTGTAGACCAAGAGAATGTAACAGTAGCTGATGGTAATGACTCGGCTAAACCGGGATTACCACATAATAAAAACGATCAGCTCTTAGAAACCATAAAACCTAAAGAACCAGACGCAGATGAAGAGTGTTGCAGTACGGAGGAGAATGGAGACGGAGGATTAGACACTGACAGTGTCTGTGATGTGGATGAGGAGAGTTTTGGTGATAATGGATGTTCTGACAAGAAGGAAACCGAGACAGAGTCTCAGAACAGTGAGCAGTCTGGTGTCACCATGGGAGAGGAGTCTTTAGACCACAGCATGGtggatgaagaagaagaggaggaggaggaggaagacaCAGACCAGGACGATCACTTGATTTACCTACAAGAGATCTTGATGCGTATTCACAATGAGTACTACTCGCGCTACGAGGCTTACCTCCGGGGGGACAGCTCCGAGATGCCGGACATTCGTAAAATCGTCCCTGAGCTGAAGAGCAGTTCACTGGCAGGCACCACCATCGTCTTCAGTGGCTTGTACCCCACAAACTACCCCATGGAGCGAACACGAGAGAGCTACCACGCAAAAGCCCTGGGTGCCAAGATTAGCAAGAGCCTCGTGCTCAATGCCAAAGATCCAGACTGCACCACCCACTTAATAGCTGCACGTGCAGgtacGGAGAAGGTCCGGCAGGCCCTGGCCTGTAAGCACCTGCACGTAGTGAACCCTGATTGGCTTTGGGGCTGCCTGGAGCGGTGGGAGAGAGTGGAAGAGCAGCTGTTCCCGCTGAAGGAGGACTACACGAAATCACACAGaagtAATAGCCCATCACCATTTCCTGATGTTCAAGAGTCCTTCCCAGCGCCTGTTATTGACCCTGTTTCCATCCAGCCCAAGGGCCCGCTGGCTCCAGAGGTGCACACGTATGACTCTGTAACTGGGAAGTTGATCCGAAGAGGCCCTCAAGTGCCACGTCACCCCCAGAAATCATCTGTGACGCTGCCAGGAAATGAAGTGCACTTAAACTTTAGGGATTTGAGATTTCTGCAGCAGGAAGATGTTGACAGCTCAAGACCAGATGATGAGCAGCCTGCACCTTCACGCAGGAAACGACAGCCGAGTCTGTCTGAAACCATGCCTCTCTACACGCTCTGCAAGGAGGACCTTGACAGTATGGACAGAGAGGTGGATGATATTCTTGGAGAAGAAAGTGATAATGATAGTGAGggaaaagagaaggaggagagagtggaaggagaagaggaagatgaggaggCCAGCAGGCTGAGTGCTGAACCAGCAGATTACCAACAGGCCGAGGGCACGACCGTCAAAGACACATCATCAACATCCAAAGAAGAAAGCAGTCGGACTGGGAGCATACCGAGaGGCCACAAGAGAAAACTGCAGGACACCAGAGAAGACGACGATGACAAAGATGGAGACTTGGCCAGCCAGTCCAGTAAGGAGTCTAATGAGGACGGTAGTAGCTCAGAAGCAGATGAGATGGCCGCTGCCCTGGAGGCAGAGCTAAATGACTTCATGTGAGAAAAGACAGTGAGAAAAATGACAATGAATTGACCTTTCGTTTCCATCTCGTATGTTTCTACGGCCCGATTCATGCATGTCACCTCTACTATATGAATaagcgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgcgtgcacatgtgtgtgagcgtgtgtgtgtgtttattgtacCTAGAACAGCGGGtggataaatatttacaaagtgtGTAAACAAAGTGAATTATTGAGGTGTGATGCCAGCTATTTGACAAAgctgttaaacattttattgcattGGGCAGTGGATGGTTAGATTttgtttcacattaaaggttttacacaaaaataaataaataaataaaatgaatttgtgATAACTGCCAAAGACTATGACAGGCAGCTATATTTTTTCATAGGTTTTTGTTGTCCTCAatttctttttccactttttgtcTATGCACAAAAACCTTTTGGCACATTACAATGTTTTGTGAGGAGAATTAAGTTGAATTCTTTGCCAAACTGAGTGTTTAATTATCATTTCTGTTATTCTGTAGAATCACTGTAAACATTTAACTTAAAATCAGCTTCCTTTACAgtatgtggggttttttttgtgcttttatttttatgttcatttaaaaGTTGATGTATGATATTCTGCTTGTATATTCGATTTCATACTGCCTTTCCTTACTAACTACCTTTCCTtactaaacaaaatgtacaaaaaaaataaaggttttagAGATTGAACATGA

Function

GO: NA

KEGG:

id description
K15732 CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 144042 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 237031 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 293481 14256524 ~ 14329200 (-) True G405681
TU481553 lncRNA upstream 7520 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 50690 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 62935 14700268 ~ 14704312 (-) True G405917
TU481577 lncRNA upstream 109515 14746848 ~ 14748447 (-) True G405929
TU481579 lncRNA upstream 112421 14749754 ~ 14753292 (-) True G405930
XM_026928370.2 mRNA downstream 7920 14598495 ~ 14614761 (-) True zbtb22b
XM_034301474.1 mRNA downstream 36439 14552044 ~ 14586242 (-) True epb41a
XM_026927893.2 mRNA downstream 131418 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 143604 14475476 ~ 14479077 (-) True tpbga
XM_034301783.1 mRNA downstream 151969 14461344 ~ 14470712 (-) True kdf1b
XM_026928369.2 mRNA upstream 15011 14652344 ~ 14670040 (-) True daxx
XM_026928308.2 mRNA upstream 222921 14860254 ~ 14867598 (-) True gnb3b
XM_026928434.2 mRNA upstream 260277 14897610 ~ 14917917 (-) True si:ch211-264f5.6
XM_026928222.2 mRNA upstream 293810 14931143 ~ 14964811 (-) False cica
XM_026928225.2 mRNA upstream 293810 14931143 ~ 14964811 (-) False cica
trnat-ugu_15 other downstream 76503 14546106 ~ 14546178 (-) True trnat-ugu_15
trnat-ugu_14 other downstream 79392 14543217 ~ 14543289 (-) True trnat-ugu_14
TU481171 other downstream 503023 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 538835 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 861126 13759761 ~ 13761555 (-) True s100a11
TU481617 other upstream 330143 14967476 ~ 15013988 (-) True G405961

Expression Profile