RNA id: XM_034301735.1


Basic Information

Item Value
RNA id XM_034301735.1
length 2687
RNA type mRNA
GC content 0.46
exon number 10
gene id usf2
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11983194 ~ 11995992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acatcattcCCCAGGACACTTTACTGATCATTTGCTGTAAAGGGTAATAATCTGTTTATAAAACCGCCAGCAAAGCGAATCACTCCTCTCCATATCTTATGAACCGCATCGGCTCGGTGTACTGGCTTCAGGCGCGCGGATGGATACGTCAACGATTCACGCCACGAAGCCGAACAAGGCAACGGAAGAAGCCTAGAAACAAAAAGCTAGGAAAACTCTGAGCTAGCTTCGACTGATAAGAGcgttttttttccactagagATCAACCCCAGAGAGGAAATTTACTCGAtattaaaagagagaaaacggCAGATTTAAGACTTCACGGATCTAACTTAGAGACTAAGAGAGGTGTAATCCGGCCGCGGacgaagaacaagaagaagaagaagaagaagagaaaaaaaacccaacaacaacaacaagcgCGCGCGcgacacacactgagaaagagagagagagagagagagagagcgcgcgaGCTTCCTGTGTGTTTCAACCGGCCTCCATTTTGTCTCCTCGCCCAGCCTGCGCCTCACGTGTCCCGGACTTGTCTCTCTCACATGACCCTCGTGTTTGTCCCCGTGATCAGCGCCGCCGCCGTCTCCGCGTTTCAAGTGTTGCCGAATAtcgcgtttaaaaaaaaaaagagagagaatcgCTCACCTTCATGGATATGCTCGAACAGAGCCTGGACGCTCAGACGAGTCACGAGAAACAGGAAACTGACGAGGTTGTTCAGTTGCAGGAAGgaGAGGGAGTCGGGGCAGAGGAACCAGCGGCGGTTACCATAGCGAGCGCCCAGCAAGCCGCAGTATTTGCTGACAATGTCCAGTACCAGTTCCGCACAGAAAACAGCAGTGGGCAGGTGACGTATCGCGTCGTCCAGGTAACAGAAGACCAATTGGAAACAGCTGGAGATGGAGGAGCTGCGGTCAGTGTCGTGTCCACTGCCGCCTTTGCTGGAGCCCAGCAGGCGGTTGCACAGGCTGTTATCCAGAACCCTTTCAGTAATGGAGGCAGTCCGGCAGGTGAGACGGTTGGGGGTGAGACGCGTTTCGCTTACTTCCCCGCTGCTACTGTCAGCGATGGTACAGCAACCGCAGTTTCAGTGCAGGCAGCCGCTGATGCGACTCTTGCACCGGCAGCAGGTCAGTTTTACGTGATGATGAGCCCTCCAGATGTGTTACAAACAGGCACGCCACGGACCATCGCCcctcgcacacacacttattccaCgaagatgGATGGAACGAGAGCACCGCGAGATGAGAGGAGGAGAGCGCAACACAATGAAGtggaaagaagaagaagagacaaAATCAACAACTGGATAGTCACACTGTCAAAAATCATCCCAGACTGCAACATGGACAACACCAAAACTGGAGCGAGCAAAGGAGGGATCCTGTCTAAAGCGTGCGATTACATTAGAGAGCTCAGGCAGAGCAACCAGAGGCTGCAGGAGAGTTTCAAAGAGGTGGAGAGAATACAGGTGGATAATGAGCTCTTAAGACAACAGATCGAAGACCTGAAGAATGACAATGCACTGCTCAGAGCCCAACTCCAACAGCATGGCCTTGAAATCAGTGGAGAAACCATTTCGCAGTGACGGACAGTCACACACATAATGGaatacacacacctccacaaaACCACCTCACAGACTTGAGATGTTTGTTAACCTGATAGAATAATAATGGCTATCTGATATTAACAGAGGTTATCAGAGAAACTATTGAACAATAGTTAATAAGCACATCTACTGTTCCACCTGTGAGAGCTTGACCTACACGGACGCGGCGACAAACGGAAACGCACCCCAACATGTGACGAAAATGGGCTTGCATTGGACtaacttgtcattttttttgtttgagtttttgAATTATGATGAATTTAAATTCTCAACAATGCCTCATGatcatattttgtttaaagctgTGGtggttttcctgttttttttccccccaatggAATTTCTTTGTAATTATTACTGCTGTCTCCAGTATGTTATATTGTTTTGTCAGCATTATTTATTAGCTCACAGAGAAGTACACAACAGGAATCCTTTGTTTTGAAGCTTGAATACCATCAAGCCAGTTGtctttcacatttaaaatgcttTGCAGTTCATTCGAGCAAATTTCCTTTGTTCCTGGGTCCAGTTACGGCCTAGTTCTTTAAGCAGTTTCTAAGATTATGTTCATCAGATATATCGAAGTTGTGGCTGAGGTGTAGATGTACTTGGCAATTACGATTGTAGTATAGGGTCAGAATTTAATCAGACAAATGATGTACATACAGCTCAGGGTTGACAAAGGAAGCTCTGTGGCACAGGAATGATAGACATCAACTGGTTGTCCCGTATTCTGAATCCGTTCGGTCTCCCATGCCACCATTTTCTAAATGAGTCCTTAATATGTCCAcactaaaatatattaaaacatcaTAGCCAGAGTGGCTTGAGCTGACTTGAGAATTCAGGCATGTACTGTCTCAAAAACCATCCCCCAGGATAAATGTTGTACTGAACAGAACATAACTGATGGTCGCAAGTAGGAGGCAACGCTAACCTACTTAGAAATGCTTCCCTATAACCACCTCTCCCACCTGTACCTGCCTTAAACATTGCAAAATTGCTTTGCGTGGTAAcatagaaatgaataaatttagtGGAAACCGTA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09106 USF; upstream stimulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479616 lncRNA downstream 12230 11970742 ~ 11970964 (-) True G404235
TU479573 lncRNA downstream 161768 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 193029 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 217427 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 287003 11691704 ~ 11696191 (-) False G403981
TU479622 lncRNA upstream 1078 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 4274 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 129465 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 150091 12146083 ~ 12147663 (-) False grin2da
TU479803 lncRNA upstream 279276 12275268 ~ 12275502 (-) True G404421
XM_034301695.1 mRNA downstream 44773 11911671 ~ 11938421 (-) False ago3b
XM_034301694.1 mRNA downstream 44773 11911671 ~ 11938421 (-) True ago3b
XM_026928241.2 mRNA downstream 100685 11867632 ~ 11882509 (-) True lipea
XM_026928125.2 mRNA downstream 119427 11844553 ~ 11863767 (-) False LOC113535038
XM_026928346.2 mRNA upstream 5024 12001016 ~ 12004480 (-) True LOC113535156
XM_034301698.1 mRNA upstream 5024 12001016 ~ 12004444 (-) False LOC113535156
XM_026928212.2 mRNA upstream 32229 12028221 ~ 12059395 (-) True slc2a3a
XM_034301514.1 mRNA upstream 76932 12072924 ~ 12084163 (-) True si:dkey-14o18.2
XM_026928300.2 mRNA upstream 111906 12107898 ~ 12119870 (-) True cacng8a
trnay-gua_21 other downstream 159231 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 160730 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 162230 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 163723 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 165220 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 435003 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 574472 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 575601 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 577607 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 578748 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile