RNA id: XM_034301740.1


Basic Information

Item Value
RNA id XM_034301740.1
length 4504
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC117596456
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1419889 ~ 1447053 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGCTGCTTTAACGCAGTCGCCATTTTGCGGCGATtttgcaaaagtaaaaaaaaaaatcttaaagtcCCGGAGAAAGGGTGGTGTTACTGTCACATAACAAGGTCTGTTCACTAAAGGAGTGTAATCCGTTCTAGCAGAAGAGATCAGACTGTTCAGGATACTTTACTAATCATAAAGATGGAGACGTCTGATCTGGACACAGATAATGGAGCCCCGTCCTCAGTAAAGAGTGAAATCCAGAtgaagagatcagactcaccaacAGCCAGCTGTGTCTCCATGAAGAGTAATGTATCTAAGGATATTCCTCCAGAACTTAAAGATGTAGattcctcatctgtacacagTCAAATCCAGATAAAGAGATCAGATTCACCCAGCTGCGTCTCTATGAAGAGTGATGAGTCGATGGATCCTCCTTCAGAATTTAAAGATGTAGATTCCTCATTTGTACACAGTGATCTGCAGGAGGCAGAAGCTGTAACAGAAAAGAACATTGTCACAGACACAGGGCACAACCCAGAAACTGCTGTAAATGAATTAAAgggatattttaaaataagtctGTTGAAGAAGTTTGAGTGGTTGAATGGAGTGATGATAAACCAGGGGAACCCAATACtcctgaatgagatctacacagagctctacatcacagtgggagacagtggagacatcaataatgaacatgaggtgagacagatggagGCAGCATCCAGGAGAAAAACAACAGAGGAAACACCAATCAAATGCAATGACATCTTTAAGCCCTTATCTGAAGAAGACAACCCCATCAGGACCGTTCTGACAAAGGGTGTCGCTGGCATCGGAAAAACAGTcactgtgcagaagttcattctggactgggctgaaggggAAGAAAATCAGGACATCCACCTCATATTTCCACTTCCTTTcagagagctgaatttgatgaaggaCCAAAAACTGAGTCTGATGGAGCTCCTTCATGTCTATTTTAAGGAGACAAAAGAGATGGACATTTCCAGTTTAGAAAaggttctgtttatttttgatgGAATGGATGAGTGTCGGTTCCCTCTAGATTTCCAGaacacagtgagagtgtgtgatgtaacTGAATCAGCATCAGTGCATGTGCTGCTGATAAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACCTCCCGACCAGCAGCAGCTGTTCAAATCCCCTCTGAGTGTGTCGATCGAGTCacagaggtacgagggttcACTGACCCACAGAAGGAAGAATATTTCAgcaagaggatcagtgatcagaacCTGGCCAATAACATCACCACACACCTGAAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggcaaagcagagagtggagagattcccaagactctgactcaaatgtacACCCACTTCCTCATCATTCAGACAAACATCATAAGAGGAAAGTACTCAAAGAAGCAGGGGAGTTATGAAGAAATGGTTCTGAAACTGGGACAACTGGCTTTTCAGCAGCTGAAGAAAGGCAACTTGAttttctatgaggaagacctgagagagtgtggcattgatgtgaCAGAAGCAGCAGTGTACTCTGGTCTGTGTACAcagatcttcagagaggagtctGGGCTTCACCAGAGTAAAGTGTACTGCTTTGTTCATCTGAGCGTTCAGGAGCATCTCGCAGCTCTGTATGTGCATCTGACATTCATGATGGAAAAGAGAAATGTTCTGACAGAGAGTCAGCCTTCAAAActggaaatgaaagaaattacaATCTCAGATGTCCACAAGAGTGCTGTAGATCAGGCCTTACAAAGTCAGACTGGACATCTGGATCTTTTCCTTCGCTttcttctgggtctctcactggagtccaatcagagtCTCTTACATGCGTTTCTAACACAGACAGGAAGTAGCTCTGAGAGCAAAGAGGAAACAGTTCAGTACATTAAGAAGGAGATCAGTAGAGACCTTCCTGCAGAGAagtccatcaatctgttccactgtctgaatgaactgggTGACAATTCTCTAGTGGAGGAAATCCAacactacctgaagtctggaaaacAAAGTGAACTCTCTCCTTCACAGTGGTctgctctggtgtttgtgttactgacaTCAGCGCAGGAGCTGGAAGAATTTGACCTGAGTAAATATACCAGTACAGACAACGTATCAGATTGGGTTCTCGTGAAGGTGATGCCTGTGGTTGCAGAATCCAGAAAAGCAATTATCAGATGTGGTACAATTAAAGAGAGAAGTTGGATGGCTCTGGACTCAGTGCTCAGATCAGAAACCTCCAAACTGCGAGAACTGCATCTGACTGTGAATACAATGCATCTGTCCCAGAATAATCTAGGAGTCACAGGAGTGAATcgtctctctgctgtactggagaatcccCTCTGTAAagtggagacactgagGTTGCAGTGTTGTGatgtctcagatgaaggctgtgctgctctgtcttcagctctgagatcaaacccctcacacctgagagaccTGGAACTATCTAATAATAATCTAGGAGACTCAGGAATGAAATGTCTCTCTGCTGGACTTGAGAATCCTCACTGcaaactggagatactgagTTTGTTTAATTGTGGtatctcagatgaaggctgtgctgctctggcttcagctctgatatcaaacccctcacacctgaaAAACCTGAATATGTCTAGGAATAATCTAGGAGACCTAGGAGTGAAGCGTCTCTCTGCTGTtctggagaatcctcactgtaaactggagacactgagGTTGCTGTGTTGTGGtatctcagatgaaggctgtgctgctctggcttcagctctgagattaaacccctcacacctgaaTGAACTGAATCTGTCTGAGAATAATCTAGGAGACTCTggagtgaagtgtctctctgctgtactggagaatcctcaatgcaaactggagatactgaggttgtggGATTGTGGTAtttcagatgaaggctgtgctgctctggcttcagctctgagatcaaacccctcacaaCTGAGAGAACTGCATCTGTCTGAGAATAATctaggagactcaggagtgaagcgtctctctgctgtactggagaatccttactgcaaactggagacactgagGATGTGTGGTTGTGGtatctcagatgaaggctgtgctgctctggcttctgctctgagatcaaacccctcacaaCTGAGAGAACTGGAGCTGAAGGGGAATAAACTAGGAGACTCAGGAaggaagctgctctctgctcttcaggatgATGAACATTACAAACTAGAGAAAGTGTTTTGGTGATGAACatctgtgtgtgactgatgaagaCTCTGGTATGACTGGGTTTCCGTGTTGGAGAATAGAGAACATGTTTACAGACACATCAGTCATTTAGTTCTAACACATTAAATAGACTCAGAAGTGAGAAGTGTTTGTTCATCTTGCACGGTGAATCAGACTGCACACAATTCTACACTGAGACTGTACAGGATGCAGACATTAGGACTGAACTCAGAACAGCTGGAATGGAGACTCAGTGTTGATCAGAacacctcagtgtgtgtgatcctGAAGTTACTGAGTGTTACAATCAGCCCCTGGAGACACAGAGACCCTCCTGCACATTCAACACCTCGTTCACTCCGAATGTTTACCTGATACTCGTCTGTCTTTTAAAGAGACTGAGGCACAGAGAGTATACAGCGTTTTCTGGATGTGAATGCTttctgaaatttatttatttatatatttgaaatgaataaacaaaaaataagagTAGTTTTTACTTACATCATTTCATAACTTGCACAGGCTCTTATAGTTTACTGTGTAATAAGTAAGCAATAATCTCTGACGGGGCGTCATACGGCCTGAAGTGAAGTGGATTTAATGTTACCACCATAAAGCTGAccataaagttgattattttcctataacagcacatccctttttattcttcttacacaacagcaatttgccaatgacttTGAGTagtttttgagatttgtatGTTGGAGATTACTCTGTGGCAATTAAGCTATAATTTTTTGATTTGTTAATAAACAACATAtcatgcttttttcttttaaccttaTATTGTTATTGTAAATAGTTACACTGACTGCACTTATAACCTGCTGTGTAATTTCACAGTGTAATGtaaatacagcattttaatcCTTGTAATGATATGTTATTGTCTCAAACCAATGGATGAAAAGACCAAGATGTATAAACTAAAACTTTCTACAGAGTGTAAAATAGTGTCTTGTACTTGTTTGTAATGCACTAAATATATCCAATAGGAGGCAGTTTATGATTTATCCTTAATAacttagtgcactacatgcTGTTTAAGATAAGAATGACTATGGTCATTTAGACACAGAGTCACTCTTGCATCATTCCGTTCATGGACGACATGCTTCTGCGGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472723 lncRNA downstream 53948 1351595 ~ 1365941 (-) True G398549
TU472717 lncRNA downstream 56853 1346939 ~ 1363036 (-) True G398545
TU472714 lncRNA downstream 78062 1341193 ~ 1341827 (-) True G398542
TU472659 lncRNA downstream 93871 1252043 ~ 1326018 (-) True G398509
TU472874 lncRNA upstream 36702 1483755 ~ 1516314 (-) False LOC113524069
TU472894 lncRNA upstream 37132 1484185 ~ 1485548 (-) True G398665
TU472915 lncRNA upstream 106574 1553627 ~ 1554940 (-) True G398679
TU472901 lncRNA upstream 117406 1564459 ~ 1577378 (-) True G398667
TU472922 lncRNA upstream 119731 1566784 ~ 1578770 (-) True G398686
XM_026910185.2 mRNA downstream 12125 1392428 ~ 1407764 (-) True LOC113524067
XM_026910196.2 mRNA downstream 32415 1383691 ~ 1387474 (-) True LOC113524073
XM_034301560.1 mRNA downstream 102281 1276281 ~ 1317608 (-) False LOC117596427
XM_034301562.1 mRNA downstream 128654 1276278 ~ 1291235 (-) False LOC117596427
XM_034301763.1 mRNA upstream 10779 1457832 ~ 1462070 (-) False LOC117596459
XM_034301762.1 mRNA upstream 10779 1457832 ~ 1462070 (-) False LOC117596459
XM_034301760.1 mRNA upstream 10779 1457832 ~ 1462070 (-) False LOC117596459
XM_034301759.1 mRNA upstream 10779 1457832 ~ 1462070 (-) False LOC117596459
XM_034301761.1 mRNA upstream 10779 1457832 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 102253 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 138118 1276653 ~ 1281771 (-) False LOC117596427
TU472483 other downstream 465928 951206 ~ 953961 (-) False fmc1
TU472541 other downstream 499386 919264 ~ 920503 (-) True G398408
XR_003403678.1 other downstream 505537 914198 ~ 914352 (-) True LOC113536357
XR_004577580.1 other upstream 14271 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 14301 1461354 ~ 1462070 (-) False LOC117596459
TU472900 other upstream 121950 1569003 ~ 1591729 (-) False st13
TU473233 other upstream 283037 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 378288 1825341 ~ 1881058 (-) False G398890

Expression Profile