RNA id: XM_034301758.1


Basic Information

Item Value
RNA id XM_034301758.1
length 2437
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC117596459
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1457832 ~ 1462070 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTGTGTTTTCTTGTTGGTGGTTACCTGCACTGATAATCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTTTTGCTGCTGCCATTTGCCATTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGAGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAACACTCTTGCAAAGTTCTCTGTACAAGGCCGGGTCTGCACCTCACTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTCTGgGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGGCAGAAATTAAAACTCTGCAAACCCACTGTGAGGACATCAAAGAAGTGGACCACTGAGGCTGTGGGGAAACTGCAGAAGTGTCTGGACTGTACAAACTGGCAAGTTTTCAGGTCTGTCACCAATAGTCTGGACGAGTACACGTGACATCCTACATTAACTTTTGTGAGGACAGCGTCATTCCATCACGCACCAGGGTGAGTTATAACAATGATAAACCCTGGTTCATAGCTAAAATCAGACAGCTGAGGTCAGAGAAAGAGGCTGCATTCAGAAGTGGGGACAAAGACAAATACAAAGAGGCCAAGTACAGATTTAGCAAGGAGGTGAGAAGAGCTAAATCAGAGCATGGTGAGAGAATGGAACAGCAGCTCTCAGCCAACGACTCTGCCTCTGTCTGGAAAGGGCTTAAGGCAATCACCAACTACAAGCCTAGAGCCCACCACTCTGTGAACGACCTGTGCTTGTCCAACAGCCTGAACAAATTTTACTGCCGCTTTGATGGGCAATGGGACATACCTGATAGACCCCCCCCCCGCAGCAGCCCCTCCTCCAATGCTACACCTGGATCACCCACACAGCCTCACACCTCAGTGTCGCTCTCTCCCCCGCCCCTCACACCTCTCTCCTCAAAGAGGTAGATGTTTAAACGGCTGAACCCCCACAAAGCCGCAGGCCTGGACTCTGTCTCCCCCTCCACCCTGAAGCACTGTGCCAACCAGCTGTCTCCGGTGTtcactaacatttttaacacctcACTGGAGACCTGCCATGTGTCAGCCTGTTTTAAAACTTCAGAGATTATTCCAGTCTCTAAGAAGGCGAGGATAACAGGACTTAATGATTACAGACCCGTTGCCCTGACTACTGTGGTCAAGAAATCATTACTATTACAGACCCTATTCTGGATCCCATGCAGTTTGCCTACAGATCCAACAGATCTGTAGACGATGCTGTAAACATGGCCCTCCACTTCATCCTCCAGCATCTGGACTCCCCAGGATCCTATGccaggttactgtttgtggaCGTCAGCTCTGCCTTCAACACTATCATCCCATCTCTGCTCCGAGACAAGCTCTCACAGCTGAACATGCCGGACTCATTGTGCAGGTGGATCACagacttcctgacagacagacggCAGTTCGTAAGGCTGGGGAAGTATGTCTCGGACTCCCGGATCATCAGCACTGGATCCCCCCAAGGCTAtgtcctctctcctctgttatTCACCCTGTATACCAACAGCTGAACATCTGGACAGCAGTCTGTCAAACTCCTGAAGTTCGCAGATGACACCACCCTCATCGGCCTCATCTCTGATGGACTGTCTAGTGTCATGGTGCAGCATGAACAACTCAACGCAGAACGCTCTCAAGATAGCggagatgatagtggatttCAGGAAGGACCCAGCCCCCCTCCCACCCGTCATCCTCTGTGACACTCCGGTGACCTCTGTCGAGTCCTTCCGCTTCCTGGGAACCACCATCACCCAGGAGCTCAAGTGGGAGCAGAACATCAGCTCCCTCACCAAGAAGGCTCAGCAGAGGCTGTACTTCTTGCGGCAGCTGAAGAAGTTCCACCTCCCTGTGAAGATGATGGTCAACTTCTATACTGCCATCATCAAATCGATTCTAACTTCctccatcacagtctggtttgCTGCTGCCACGGCCAGGGACAAGGCCAAGCTGAAGCGCGTCATCCACTCCGCTGAGAAGGTGATCGGCTGCAGCCTCCCATCACTCCAGGACTTGTACGTCTCCAGGACCCGGAGATGGGCAGCCAGGATTGCAgccgacccctctcaccccggacATGTACTCTTCCAGCCCCTCCCCTCAGGACCATCAGGACCAGGACCGCACGccacaagaacagcttcttccccGCTGCAGTCAGCCTGCTGAACA

Function

GO: NA

KEGG:

id description
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472723 lncRNA downstream 91891 1351595 ~ 1365941 (-) True G398549
TU472717 lncRNA downstream 94796 1346939 ~ 1363036 (-) True G398545
TU472714 lncRNA downstream 116005 1341193 ~ 1341827 (-) True G398542
TU472659 lncRNA downstream 131814 1252043 ~ 1326018 (-) True G398509
TU472874 lncRNA upstream 21685 1483755 ~ 1516314 (-) False LOC113524069
TU472894 lncRNA upstream 22115 1484185 ~ 1485548 (-) True G398665
TU472915 lncRNA upstream 91557 1553627 ~ 1554940 (-) True G398679
TU472901 lncRNA upstream 102389 1564459 ~ 1577378 (-) True G398667
TU472922 lncRNA upstream 104714 1566784 ~ 1578770 (-) True G398686
XM_034301741.1 mRNA downstream 10779 1419889 ~ 1447053 (-) False LOC117596456
XM_034301740.1 mRNA downstream 10779 1419889 ~ 1447053 (-) True LOC117596456
XM_034301742.1 mRNA downstream 10779 1426797 ~ 1447053 (-) False LOC117596456
XM_026910185.2 mRNA downstream 50068 1392428 ~ 1407764 (-) True LOC113524067
XM_026910196.2 mRNA downstream 70358 1383691 ~ 1387474 (-) True LOC113524073
XM_034301745.1 mRNA upstream 49 1462119 ~ 1516296 (-) False LOC113524069
XM_034301746.1 mRNA upstream 49 1462119 ~ 1487384 (-) False LOC113524069
XM_034301747.1 mRNA upstream 50 1462120 ~ 1516296 (-) False LOC113524069
XM_034301743.1 mRNA upstream 50 1462120 ~ 1516296 (-) True LOC113524069
XM_034301744.1 mRNA upstream 50 1462120 ~ 1516296 (-) False LOC113524069
TU472657 other downstream 140196 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 176061 1276653 ~ 1281771 (-) False LOC117596427
TU472483 other downstream 503871 951206 ~ 953961 (-) False fmc1
TU472541 other downstream 537329 919264 ~ 920503 (-) True G398408
XR_003403678.1 other downstream 543480 914198 ~ 914352 (-) True LOC113536357
TU472900 other upstream 106933 1569003 ~ 1591729 (-) False st13
TU473233 other upstream 268020 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 363271 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 786090 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 910226 2372296 ~ 2426606 (-) True G399028

Expression Profile