RNA id: XM_034301766.1


Basic Information

Item Value
RNA id XM_034301766.1
length 6100
RNA type mRNA
GC content 0.45
exon number 12
gene id si:dkey-222b8.1
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4884598 ~ 4905395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagagagggagggagggagatgCTGGAGGAGGCTGGGAGATTCATATCGGCGTGGACAGAGAGCTGATGTGACAGCAGGGAGGGGGGGAAGCCGAAACTTGGATTTCTACCTCACTGTCCTGCTTGTGTTCATGTTGATCCCGGGCTGATGTcagaATGTCGGTGAACCCCCCCAGCAGTAACGATGCCTGCCTCAGCATCGTGCACAGTCTCATGTGCCACAGACAAGGCGGCGAGAACGAAGGCTTCGCCAAGAGGGCCATCGAGAGCCTCGTCAAGAAactgaaggagaagaaggatgAGCTGGACTCGCTCATCACGGCCATCACCACCAACGGGGTCCATCCCAGCAAGTGTGTCACCATCCAGAGGACGCTAGACGGAAGACTGCAGgtgGCCGGGCGTAAAGGTTTCCCCCATGTGATCTACGCTCGTCTATGGCGCTGGCCGGACCTTCACAAAAATGAGCTGAAGCACGTCAAGTTCTGCCAGTATGCCTTCGACCTAAAGTACGACAACGTGTGTGTGAATCCGTATCACTACGAGAGAGTCGTTTCTCCTGGCATCGTTGGCCTCAGCCTACAGAACACAGCTCCCTCCGGCAGGCTGATTAAAGAGGAATACACCCATGACTGCGTTCAGATGGACGTTCCTCCTGGTTTGCCTCCACAGTCAGACCACCAGGGGGCGATGAAGCTCCCTGCACCGGAGCATTACCCCCCACCGCTGCCACCTTTACAGATGCCCCCTGAAGCAGCCCGATGCCCTCCGCCTGCCACCCTCTACCCCAACATGCCCCTCTCCCCAACTGcaTCTGGCTCGATGATGTCCATGCAGGGTGGTCACAGTGAGGGTCTCCTGCAGATCGCATCCCCTCAGGCTCAGGTCATGGCCCCAACCCCTCCTCCCTCCACGCCCCCTCAGGCCCCGCCCACTCAGAACGGCTACAACggctccaaacacacacaggcacagggATCCTTTCACACTACTTGGACGGGCAGCAGCACGGCCTCTTACACTCCTATAGGACGCCAGCAGAGCAGCCGCGCCCACCAGCCTCCTCTCCACCACCCCCACTACTGGTCTCAGCATCACAGCTCGTCATCATTCCCTCCGCCAGTCTCCAACCATCCAGGGCCAGAGTTCTGGTGCTCCATTTCGTATTTTGAGATGGATGTTCAGGTTGGTGAAATGTTTAAGGTGTTGTCCAGTTGTCCCGTGGTGACGGTGGATGGCTACGTGGATCCATCCGGAGGAGATCGCTTCTGCCTCGGGCAGCTCAGTAACGTTCACCGTACTGAGGCCAGTGAAAGGGCCAGGTTACACATAGGTAAAGGCGTGCAGCTGGAGTGTCGAGGTGAGGGCGATGTGTGGATGCGATGTCTGAGTGATCACGCCGTCTTCGTTCAGAGCTACTACCTGGACAGAGAGGCAGGACGAGCGCCAGGGGACGCTGTCCACAAAATCTACCCAGGAGCCTACATCAAGGTGTTTGATCTGCGTCAGTGCCATCGGCAGATGCAGCAGCAGGCGGCCACGGCTCAGGCAGCGGCAGCGGCTCAGGCAGCCGCCGTGGCAGGGAACATTCCGGGTCCAGGGAGCGTCGGGGGCATCGCTCCTGCAATCAGTCTGTCAGCAGCCGCAGGGATCGGCGTGGACGACCTGCGCAGGTTGTGTATCCTGCGTCTGAGCTTCGTGAAGGGCTGGGGACCCGACTACCCGCgccacagcatcacacacactccctgctGGGTGGAGGTGCATCTCCACCGCGCCCTGCAGCTGCTGGACGAGGTGCTACACACCATGCCTCTGGCAGACCCTGGACCTTCTAACTGAGAGCAGGGAGAgataactacacacacaaacatgacacacactcacatacacacacacagacacacacagtgatcatATATCACACGCACTGAGCAGGCACGGTATAAGTCTGTGTTACAGTACTGTTTATAAGGCGTCCTGGTTGACTTTCCCTCATACCCCGAAAATGATAATAATCTATTGGGTATTTGTGAATTTGTACTTTTAACATTTGAGAAAGTCAAACACATGATGATGTTGCTAGGCAACAAGGAAATCGCGACTGTAAGGCTAacaatatagctagctagcatcacTAAGTCTTAAATACAGATGATGTAAAGGTGAAATGACAATGAAAACGGGACAATCTCATCGGGAACaccaacatttacctcagatgtgctggttaattactaaaaaaaaagactgtgtatggctaaaattacactttaatCACACTTAGCATAAACAACAAATAGAACTTTTACTGAAACATGTCAACATTGTGTCACAACTTCATAAACTCAGAGCCATCAGAGACTTTTAAAGTAGTGAATATCACAGACGTGGCTGTTTAGAGTGAATCATCTTGTAAGCACAGAAAACACGACCCACTTATACTTAGCATACATTACGCAAGATGAGAAGACAAATCCATCAGGAATaccaacatttacctcagatgtgatGATAAATTACTAAACACAGACAATTTACAACTAAAATTATCAAATGCGTTTGATGTTAAGTGTGAGATGGCTTTCTAAATAGCTAGCATTCTAACTACCTGGTACCTGCAAGTTAGCATGCcactagctagcttgctaacttagctagctgAATGAGGTAATGAATTTAGACCCTCGTGAACTGGCTACAGGAAACCCAATCTGAACAacatatttgaataattaaaaaaaaaaaacaactatacaTCTTATTGTTCCTATCTAATTTTATGCACAAATTCATCGACCATTTTAGCTGCAAAAAGAAACCGCATCATGTTGGAATACCTTCTGCGTGAGTCCGTCACCTGACATCTACGCTCAGGTTAAATCCAAAACCATAAAGGATTCTTCAGTTTTGTTTCTCTTAGGGGAACCCGTAATGGTTCTATGGAGAGACGTGTTTCTTTCTCAGAAAGAGGGCCAACTCGAACCAACTCTTTAGGAAGCTAGAAATAGATGAGGAACGCTTTTTATTGACTCGATCCTATTTTGCGTATAAAAATCTCTTAAGATGGCAGTCAGGGATTCAGTCTAGGGAAGTGGTAGGAGGACAAGGCGCTAAAGGAGTGTTAAGGACAGTACTGTAACGCAGCTTTACTGTTTATCCTTCATCGGATTCATCCAAATGCAATCTATGGAGTTGTTCCATAGGGATGGAATGTACTTTTTTGCAGAATAGatgtatgtatttaatttagCACTGCCTATCTTCTGATTAATGCAAGTTTTCTCTAGGCACGTGCCGATAATCAGTTATATATCACAGGATTGTATACTGTTATAGAAGACTACCCCTGTGCTCCACTCAGGAGGAGGCTGCCTAGGTAGGCCGTATTATGGGCACCTTGTAAGGTAAAACCTGTCCCATTTACCAGGCAGCATTCTGTTTACCAaacgagtttttttttttttttagagtcatttcattttaatggatAAATGTGATAATGTCCTAATCTGCAATAAATGATTAGTCAGTTATTGTGATACGAGAATTTGATATCGGCACATGCCTAGTTTTCACAGGGTTGAGTTCAGGGAAATAGCTTTACTGCccgtacactctcagaaatcaAAAGCTAATAAAccgtacctttccttgtcactggtaTACCTTTAGTATCTTTTCCCTGGGAAGgtgcatatagtgtacctttaaagctttactatattaattaaagataaaataGTGGTCCTTAAGCTCTAAACCAGGGTTCATGGACTGGTGGATACTAGCAGagtatttcagcagactgaaccacctaaatgaaaaaatactgtagcagaatcTGAAAAATGTGTAGCTCTGTGATGTTCTCTGTTACGGCTAATCCAATCACGTGCATTTATGGAAATTATTTAGCTGATGGTAGCTCATCGGACCACACACTAGCTAGAGAAATTAGCTTAGAAAggatagatttttcattttacttacAGCATAACTTGTTTAAAAAGAAGGTTGACAACAAAAACggaatgtttaaagacaaatggacagaaaagTATGCGATTGTCTCCCTGCACTCTGTTCAAAACCGATGTATGTCCTCTGTTCGGAGTCTGTGGCTCTAGTTGAAAGTGgaacatgaacatgaagtgCTGCTATGGAGCAAAACATAACCACATccaattgtcttatttatagccatgaatgAGCTGCACATTTCTTGTCGTAATTCATGTTGAAagagattttatgtaaatggaTCTTCACAAATTTTAGGTGAATACtctttcccccattttctccctaatttgggcTTGGCCAAATACGACAGCTTCCAGCAAgtttttttgaactgctgctcctACTGCATCACAAAGCCGTGTAACAcgctcggaggaaagcgctatctaccctcttccacatacaggagctcacagacgcccatgattggttggtgtcgctgtgattgacaagtAAGACAGAGtttgcccctcccacccagataGCACGGCCACTTTTATCTCTTAGACTCCCGGCCAGGGATCGCTGTGGCATCGTCTGGATTCAGACTCGTGATCTCTGGACGCACTTTTACTGTTGCACTAAAGGTAAAAATCAATGTAGCCATAAGCATCCACCCCAGGAAGAAGGAAAGGTACGGTTTCATACCTTCTTTTTTGAGAGTGCGCACAGGTCCAGATTTGCACATGGTTgaattatagtaataataataataataataataataataataataataatacaaaataatattcaCTAATACAGAATAATTCtactctctcacaaacacacacacacacacacacacacacacacacacacacacacatacacacacacatgacttcTGCAGGTTTGTTAAGTGTGTGATAATGCCCACACCTCAGAAGCCGGCTCCTTGAGGCCAAACTGTTCAGGAACTCTCTTCAGATGGAAAACAGAACAGACCTCGAAACCAGAACTCTCGCTATATCCGTGCTCTgtgttcctctgtgtgtgtggaagccACCTCCACTTCCTGTGCTCGTCCTGAGTGTGTCCGACGATCCATACGAGTGCAGCCTTCGagctcatttattttcatacgaaaaaaaaaaagaaaagatgccGAAACATTGTTCAGCTTTAAAATGGTGGTGTTGGTATTTGTGGTGCCGCAGTATGGTGTTTGTAAGCAAATCATCTGCCATGTGGTGTACACCAAAGCCTCAGAATACCTCATCGTAATCAAGCACGGACCCGGTGGATTTATGTTATAAGCCAAAAATGGGACATTATTTGCAGTCttcacctcacctcacacagTATCATTTAACGAAAAGGGAAAATAGGACCATAACGAACCCAGTAACTGacttaaagcatttattttgcttgagacatttatttacacttatttGCATCAGTGTTTCCTGACTGAAGTCCATGAGCCTGCACTGGATTACAGGAGTATCCTAAACGCTAGCAAGAATAATAAGGGGCAAATGTCACATCATAATACATGATATCAATCACCACCAAAAAATGTGAAGCCATAATCTGAAAATTTGTATGTTCAGAGATTTTTgcttataaaaaaatacaagtaaaaTTCATGTCAAATAAATTACTTATTACCATCAACAGCAACAGAGCTATTTAAGCACCGATCGCTATGTATCGTTATGTTCATATATAACGATATCACCCAGCTATAATCCCGGTAAAGTGTAACAATTAATGGTAGAGCTATTTCATGGTATACTGTTGTACCTGTATATCGTaccaaatgtcttttttttgtctagaATGCTTAGTTACCTTTAGATTAAAGCCTAGATTATGGCTTCCAACTCCAGATCTACCATCTGAAAAGCTACCTTTTTAGGGAAGATCATTCATTCTAACTTTATTGTACATGATTCATCTAACTAAGATTTTCAACAGCCGGACCATGAGTGTAGGATTTGTGCAGGAAGGAGAATAAACTGGAGGAATGTCCAGgaatgttttaaacaaaaatacactatTGTAAATACATCACAGTGAGTATTCAGTAAAACAGTATTGTATGTGCTTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04501 SMAD4; mothers against decapentaplegic homolog 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475268 lncRNA downstream 595 4881706 ~ 4884003 (-) True G400503
TU475255 lncRNA downstream 50615 4833754 ~ 4833983 (-) True G400494
XR_004577584.1 lncRNA downstream 67303 4812661 ~ 4817295 (-) True LOC113543895
XR_003404450.2 lncRNA downstream 67303 4813444 ~ 4817295 (-) False LOC113543895
TU475232 lncRNA downstream 98941 4779611 ~ 4785657 (-) False G400477
TU475264 lncRNA upstream 5955 4911350 ~ 4918883 (-) False G400500
TU475265 lncRNA upstream 5955 4911350 ~ 4918883 (-) True G400500
TU475282 lncRNA upstream 106792 5012187 ~ 5012795 (-) True G400517
TU475266 lncRNA upstream 125464 5030859 ~ 5035922 (-) True G400501
TU475347 lncRNA upstream 222840 5128235 ~ 5136641 (-) False LOC113543870
XM_026942104.2 mRNA downstream 6954 4857220 ~ 4877644 (-) True syt11a
XM_026942249.2 mRNA downstream 34030 4840903 ~ 4850568 (-) True rit1
XM_026942294.2 mRNA downstream 44810 4836850 ~ 4839788 (-) True pex11b
XM_034301661.1 mRNA downstream 136760 4709738 ~ 4747838 (-) False sema4ab
XM_026942109.2 mRNA upstream 3131 4908526 ~ 4910977 (-) True snapin
XM_026942235.2 mRNA upstream 23083 4928478 ~ 4954246 (-) True eepd1
XM_034301534.1 mRNA upstream 55707 4961102 ~ 5008464 (-) True sept7a
XM_034301535.1 mRNA upstream 55707 4961102 ~ 5008461 (-) False sept7a
XM_034301533.1 mRNA upstream 55707 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 751676 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1522772 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1523644 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1573166 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1608643 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 55707 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 682003 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1267593 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1466255 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1530592 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile