RNA id: XM_034301771.1


Basic Information

Item Value
RNA id XM_034301771.1
length 3701
RNA type mRNA
GC content 0.49
exon number 17
gene id gga3b
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3295919 ~ 3309397 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcatgcgcagtgcagGGCCGTGGGGGGACGCTGGCTTGGGGAGTGACAGTCTCTACTCTGTGGATGTAgatgataaaatgaaatgtggatgATACTATGAGGCGAGATGGCGTACCAGGAAGGCGAGACGCTCGAATCGTGGCTTAACAAAGCCACTCACCCAACTAACAGGCAGGAGGACTGGGAGTACATCATCGGCTTCTGTGACCAGATCAACAAGGAACTGGAAGGtcCGCAGATCGCTGTACAGCTTCTTGTTCACAAAATCCACTCACCTCAGGAATGGGAGGCTCTCCAGGCATTAACTGTGTTGGAGGCCTGCATGAAGAACTGTGGGAGACGGTTTCACAACGAAGTGGCCAAATACAGGTTTTTAAATGAGCTCATCAAAGTGGTCTCCCCCAAGTACATGGGAGAAGGCGTCTCTGAGAGAGTGAAGACTAAGATTATTGAAATGCTGTACAGCTGGACTGTAGCGTTCCCTAACGAGGCCAAAATAAGTGAAGCGTACCAAACACTGAGGAGACAAGGACTCATCTCATCAGACCCCGAGCTGACGGCTGATAAAACTCTGATCCCGTCTCCACCTTCTCGCCCCAAAAACCCAGTGTTCGACAACGAGGACATGGGCAAGttgttggCGGAGCTGCTCCGGAGTAAGAACCCTGAGGATCTGCAGGAGGCCAACAGGCTGATCAAGAACATGGTGAAGGAGGACGATGCTCGGGTTCAGAAAATGACCAAACGCATGCACACACTGGAGGAGGTAAACAATAATGTCAAGCTACTGAGTGAAATGCTGAGTCATTACGACCGAGACAGGTCATCAGACGCAGACCGTGACCTCATCAAGGAGCTGTATGAGCGCTGCGACAAACTGAGACGCACGGCATTCAAACTGGCCACGGAGACAGAGGACCACGACACTAGTTTAGgtgaAATTCTTCAGGCCAGTGATGAGCTGGAGAGAGTTATAAGCCTGTATAAGAAGGTTGTAAAGGGCGAGACAGATGGAGGAGACACTGAGGAACAGAAACCAGCACTCGGGAAAGGTTGTGAGACAGACACACTCATTGATCTCGGTGGTCTGGATGAACCCCCTGCTCCCCAGACAGCTCCGCCCGTTCAAGTCTCCAGAGCACctttgaccaatcagactgcCTGCAGCATTCCGGTGATCCCGCCCCCTCCCCGCCGATTGGCTGGAGGATCTGCCAGTCAGACCAGCAGCCCGATTCACAAAGCCTCAGAGCCATCACCAGCCCACTCTCTGCTCGACGATGAGCTGCTGTCCCTAGGGTTGAATGAACCTCCTCCGGTACAGAGCAGACCAAAACTGGAGGACGTGTCCAACCAGTGGACGTCTTTACAGgcTCCGGCTCCTCCTGGACTCGACCTGTTCTCTGGTGGAGCAGCAGCACCAGGCACCATGTTTCCTCCTACACACACCTCAGGACACCCCACACACCCCGCACACCCTGACATGGTGACTCAGGGGCTGCAGGATCTCGCCATGCTGAACCTGGGAGATGTGAAGAGTGTCTCAGGTCAGCCCGTCATGGCCGCAGGTGTTGGTTTGGGTTTCGCCGtgccctcctctctctcctcctccaatCCGTTTATCAGCTCCACCATGCCCGGCTCGCCCCTGCGCTCTCTACAGGGAACCCCTGCGCGCTCTGAGGCATCCCTCAGCAACCTGCATGTTCCCCTGGACTCCATCAAAACCAgtaaggCTCTTCCTGTGACTGCGTACGATAAAGACGGAGTGCGTGTCCTCCTGCACTTTGGCACTGAGTGTCCTCCTGGGAGACCGGATGTCCTCGTCATGGTGGTGTCCATGCTGAACACGGCTCCTCTCGCAGTGAAGAACATCGAGCTACAGGCTGCAGTGCCGAagtCTATGAAGGTGAAGCTTCAGAGTCCATCAGGAGCCGAGCTGGCGCCCTTTAACCCCGTCCTGCCCCCTTCCTCCATCACACAGGTCATGCTTCTTGCTAACCCGCTTAAGgagaaGGTGCGTCTGCGCTATAAGCTGATGTTCCTCCTCGGTGAGAGACAGTACTGTGAAGTGGGTGAGCTGGATCAGTTTCCTCCGCCAGAGAGATGGGGAAACCTGTagagctaacacacacacacacacacacacacacactctgatggTAAGGTCAGGTGACTGAGATCTTAACTCTAAGATCACTATAAGATCTGCCTCAGACATCTGTAAGAAACCTCCtggtttatttattgctttgtttgtattttattaaagctgTAAATGATGAGTGTTATCAAGGGTCCAAGTTAGCTTCTAGTCACTTGGAGCTACAGCGTTATCGCTAACACTGAGATTCCACACTGCACACGTGGACTCCAAATCATCTGTGAAAAGGAAATCACGGTTACtgcactctctgtctctctttatccatatacatgtgtgtgttacaccacACAGACTGTGTAGTGCTCTACATGTACTGTAAACACACGCCCTTGTGCGCTGGACAGTTTGGTATCTATCAAAACCCACCTCTTGCCTCTGACTTTAATGTGAACATGTGTAATAATGAAGCTCCATCGTCCACAGTGTCACTCAATCAGGGACAGTCTGGGGCGGAGCGTCCATCTTTGAGTTTTCTGGTTACGTGAGGAAAAAATCGATCTCATCAGATGTATCAGATGTGTTTTCAGCTGAACCCTGAGCTCACGCTAGCAAGCAACAGAGCGACAGGTGacatttcatttcctgtgtgAGTTTATGACTTCATCCCAGCGACAGTAACAAGTGACACGACagagaaacagattttttttctgttttaacttAAATTCGTTATGGTTATGAGGCTGTAATGAAACAAGTCCTCATACAAATCTGATGACGTTTTGTCCGATGTTTCTCCTGTTCTCACAGTGTTTGGtgataaaaatggaaaaaagtttctttcttttattagaAAGTGATAACATTAGTGTCATGAGACGCCCACACGTGATAGCATTAACAGTCATGACGTGTCCACAAGAGGCAACTCACCAGGAACCTGTCGCTTGCTAGCGTGATCTCTGCCTCAGACACGAGCGAAGTCAAAGTGCTGAGGCGATTTTTTACGTTTTGTTGAACTCAGTTTaatgtaaacatgtttaattttatatgtGATGTTTACTGAATGTacgtgtttttatttattgatgtcaTTGTGCAAtacatgtgtgtttaatttctgtatgtgttttattgctttagtgtttttttcctcttaggACTGTGGTCCGGACTTGTTATTACTAATGTTATTACTAAGACATACAGGTTATAACATAGACGCTAAAACTGTAATAACAACTGTAATAATTTTgggccttcacacacacatacagagcgaccatgtgtgtgtgtgtgtgtgtgtgtgttgtgagagagagagaaagacgatCTGCGTTCTgactgtatacagtgtgtatgggTTTAAAACACAAgccataaaaatgtaattgtccTGATCACTGAGACTGAAGATGTGAATCTGAAAATATAAGCTGTGCTTGAGAATCAAGactgcccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgtatgTGCTTGTGCCATGCAACAGTTTGTACAGTATATGGTTCGAACATGTGATCTGTCCAGCTGcatgcagaaataaaatgtctCTTTTAAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473957 lncRNA downstream 646 3286582 ~ 3295273 (-) False G399489
TU473948 lncRNA downstream 4291 3286055 ~ 3291628 (-) False G399489
TU474037 lncRNA downstream 21077 3273556 ~ 3274842 (-) True G399543
TU474024 lncRNA downstream 46593 3235643 ~ 3249326 (-) True G399530
TU474035 lncRNA downstream 50875 3243557 ~ 3245044 (-) True G399541
XR_004577534.1 lncRNA upstream 51274 3360671 ~ 3363611 (-) True LOC113534314
TU474141 lncRNA upstream 51277 3360674 ~ 3363596 (-) False LOC113534314
TU474142 lncRNA upstream 51277 3360674 ~ 3363596 (-) False LOC113534314
TU474150 lncRNA upstream 105568 3414965 ~ 3431282 (-) True G399629
XR_004577577.1 lncRNA upstream 205415 3514812 ~ 3516233 (-) True LOC117596450
XM_034301633.1 mRNA downstream 629 3118335 ~ 3295290 (-) False LOC113525116
XM_034301458.1 mRNA downstream 2051 3250086 ~ 3293868 (-) True LOC113534415
XM_026911585.2 mRNA downstream 61595 3224065 ~ 3234324 (-) True LOC113525126
XM_026911562.2 mRNA downstream 73139 3206908 ~ 3222780 (-) True jpt1b
XM_034301638.1 mRNA downstream 99384 3184229 ~ 3196535 (-) True LOC113525117
XM_026927230.2 mRNA upstream 72717 3382114 ~ 3403530 (-) True evplb
XM_026927232.2 mRNA upstream 72717 3382114 ~ 3394690 (-) False evplb
XM_026926985.2 mRNA upstream 109983 3419380 ~ 3427527 (-) True atg4db
XM_034301543.1 mRNA upstream 124331 3433728 ~ 3464801 (-) False mast1b
XM_034301542.1 mRNA upstream 124331 3433728 ~ 3464801 (-) True mast1b
TU473964 other downstream 19964 3203290 ~ 3275955 (-) False G399489
TU473965 other downstream 19964 3264713 ~ 3275955 (-) False G399489
TU473969 other downstream 19964 3273840 ~ 3275955 (-) False G399489
TU474032 other downstream 61618 3224100 ~ 3234301 (-) False LOC113525126
trnay-gua_7 other downstream 126498 3169334 ~ 3169421 (-) True trnay-gua_7
trnae-cuc_42 other upstream 1964 3311361 ~ 3311432 (-) True trnae-cuc_42
XR_003403535.2 other upstream 51485 3360882 ~ 3360954 (-) True LOC113534841
XR_003403536.1 other upstream 52351 3361748 ~ 3361826 (-) True LOC113534843
XR_003403516.2 other upstream 814852 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1651705 4961102 ~ 5008461 (-) False sept7a

Expression Profile