Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034301780.1 |
| length | 1352 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | LOC117596466 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 1821683 ~ 1823769 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048882 | lateral line development | biological_process |
| GO:0048884 | neuromast development | biological_process |
| GO:0048925 | lateral line system development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU473015 | lncRNA | downstream | 95155 | 1726120 ~ 1726528 (-) | True | G398751 |
| TU473004 | lncRNA | downstream | 105220 | 1715036 ~ 1716463 (-) | True | G398743 |
| TU472992 | lncRNA | downstream | 129767 | 1691472 ~ 1691916 (-) | True | G398732 |
| TU472993 | lncRNA | downstream | 129767 | 1691665 ~ 1691916 (-) | False | G398732 |
| TU472983 | lncRNA | downstream | 142001 | 1677917 ~ 1679682 (-) | False | G398730 |
| TU473238 | lncRNA | upstream | 1828 | 1825597 ~ 1835296 (-) | False | G398890 |
| TU473234 | lncRNA | upstream | 9047 | 1832816 ~ 1864843 (-) | False | G398890 |
| XR_004577585.1 | lncRNA | upstream | 51430 | 1875199 ~ 1876420 (-) | True | LOC117596467 |
| TU473273 | lncRNA | upstream | 128152 | 1951921 ~ 1952184 (-) | True | G398922 |
| TU473276 | lncRNA | upstream | 132277 | 1956046 ~ 1959562 (-) | True | G398925 |
| XM_034301455.1 | mRNA | downstream | 11830 | 1808522 ~ 1809853 (-) | True | LOC117596405 |
| XM_034301781.1 | mRNA | downstream | 52934 | 1766704 ~ 1768749 (-) | True | LOC113524064 |
| XM_026910171.2 | mRNA | downstream | 92566 | 1726901 ~ 1729117 (-) | True | LOC113524053 |
| XM_034301521.1 | mRNA | downstream | 131002 | 1683598 ~ 1690681 (-) | True | mief1 |
| XM_026910204.2 | mRNA | downstream | 172636 | 1639569 ~ 1649047 (-) | True | cbx7a |
| XM_026910160.2 | mRNA | upstream | 35113 | 1858882 ~ 1860957 (-) | True | LOC113524043 |
| XM_034301779.1 | mRNA | upstream | 49150 | 1872919 ~ 1875037 (-) | False | LOC113524042 |
| XM_026910159.2 | mRNA | upstream | 49150 | 1872919 ~ 1875008 (-) | True | LOC113524042 |
| XM_026910212.2 | mRNA | upstream | 92521 | 1916290 ~ 1932126 (-) | False | LOC113524085 |
| XM_026910211.2 | mRNA | upstream | 92521 | 1916290 ~ 1932126 (-) | True | LOC113524085 |
| TU472900 | other | downstream | 229954 | 1569003 ~ 1591729 (-) | False | st13 |
| XR_004577580.1 | other | downstream | 359613 | 1461324 ~ 1462070 (-) | False | LOC117596459 |
| XR_004577579.1 | other | downstream | 359613 | 1461354 ~ 1462070 (-) | False | LOC117596459 |
| TU472657 | other | downstream | 504047 | 1276653 ~ 1317636 (-) | False | LOC117596427 |
| TU472656 | other | downstream | 539912 | 1276653 ~ 1281771 (-) | False | LOC117596427 |
| TU473235 | other | upstream | 1572 | 1825341 ~ 1881058 (-) | False | G398890 |
| trnad-guc_31 | other | upstream | 424391 | 2248160 ~ 2248231 (-) | True | trnad-guc_31 |
| TU473396 | other | upstream | 548527 | 2372296 ~ 2426606 (-) | True | G399028 |
| TU473971 | other | upstream | 1137944 | 2961713 ~ 2964157 (-) | True | G399490 |
| trnay-gua_7 | other | upstream | 1345565 | 3169334 ~ 3169421 (-) | True | trnay-gua_7 |
