RNA id: XM_034301810.1


Basic Information

Item Value
RNA id XM_034301810.1
length 3838
RNA type mRNA
GC content 0.57
exon number 29
gene id ubap2l
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13603327 ~ 13638125 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTATTCGGTTAAAGGGCGACTCGGTGTCGGATTTAGGAAAATTCTGGAGCTTATTTTTGGGTTGATTAGGAGGTCAGCTCAGAAGTGGCCTCTTCTTTGGTCAGCGTTCTCGTAAAAATCTTCCGAGACATCCAGTCGCGTTTCTGGTGTTTATTCCTTGTAAATACTCTtatttgtatatactgtaaatgatgACATcggtaggaggaaaccggaacCGGGCTAACTGGgagcagacacagacacagagccaGTCACAGCACAAGCAGAGGCctcagGCCACCGCTGAGCAGATCCGACTCGCGCAGATGATCTCGGACCACAACGATGCTGACTTTGAGGAAAAGGTCAAGCAGCTAGTTGACATCACTGGGAAGGACCAAGACGAGTCTATGATAGCGCTGCACGACTGCAACGGAGATGTGAACAGAGCCATCAACGTGCTGCTGGAGGGCAGCCCTGACACCGATTCATGGGAAATGGTGGGAAAGAAGAAGGGGGTGTCGGGGCAGAAGGAAATCGCACAGACagatggaggagaagaagggAAGGAGAAtcgagagagaggaggaggaggagagagagacgtaGCACGTCGTAGAGGAGGGGCTCCGAGGAGGGGGCGTGGAACCAGCCGTGGACGAGAGTTTCGTGGGCAGGAGAACGGCGTGGACGGCACTAAAGCAGGTGGAGTAGCGGGCAGAGGGACGGAGCGCGGCCGCCGAGGACGAGGCAGAGGGAGAGGTGGTGCTGGTAGGAGAGGTGGAAGGTTTTCAGCTCAGGGCATGGGTACGTTTAACCCGGCAGACTACGCTGAGCCAGCGCAGACAGAGGAGAGCTATGCCATGGGAAGCACTTGGAGCAACACGGGCAACTTGGAACCAGAAGAAGGTGCCAGACTCGAGTTTTCTGGAGGAGAAGGAACAAATTATGCACGGAAGTTTGACTCTGCTCCTGGTGCGTGGCGAACTCCTACAGAAGAGTGGGGCACTGAGGACTGGGCTGAGGATCTGTCAGAGACAAAGATCTTCACTGCCTCCAGCGTGGTGTCCATGCCCATGCCTCAGGAGAACGTTACCATAACAGCTGGACAGAGGATTGACTTAGCAGTGCTATTGGGGAAAACACCGCCCTCCTCCTCTTCTGAGACGGAGTCTGCTCCAATAGATGCCCCTCAGCCTCCATCTCTATCCCAGTCTCTGGTTTTTAGCAACTCCAAGCAATCTGTCTCGCTCTCCCAGCCCTCCTCCAGCACCTCATATAATCAGCACAGCATGGTGAGCATGCTCAGTAAGGGTTTTGGTGAAGTGGGAGACTCTAAAGGCACCAGTGGAAACTCCACCACTGGTTCCCAGTTCCTGGAGCAGTTTAAGACAGCGCAGGCTCTGGCACAGCTGGCAGCGCAGCATTCTCAGAGCGGCCCGTCCAGCACAGGCCCCTCCAGCTGGGAGTCCAGTCCCGCTCCCCTGGCACAGTATGACATGAAGTCTCAGACGGACGCAGCGGGGCACAGTCCCTTCACCAAGCGGCAGCCGTACCAGCCCACCTCCTCCACTGCGTCCTCCATGATGGACGCCTTCCTGCAGGAGAAAGGTCCTACCCCCTCCACCGCCTCTTCCCAGCCCACCCCTTCCACCTCTTTGGCCCAAACAGTCTCCACTCCGAAACCTTCAGCCCCCGCAGTAAGCCAGCAGCAGATACCTTCGGGTCCTTCAGAACCTCAGGCCTCCAGTCCTCTGCCCCTACAGCAGCATAAGCTCAAACATCAAAAGAAGAGAACCTCCATCACCACCAAGatCCCTGCTTTAGCAGTGGAGATGCCAGGTTCAGCAGACATACCTGGACTCAACCTGCAGTTTGGAGCGTTACAGTTTGGCTCTGAGCCTGTCCTGCCGGAGTACGACACCGTAGCCGTAGCCACCACAACACCAGGCAATGCGACTCAGAACAGCCTCTACACCAGTGCCAACAGCGAGCAGGCTCCAGCTCTGTCCAGTGCCACGCAGATGGAGCTGTATGAGCAGAGAGCGAGCCAGACCCGGCGCTACCCACCCTCCGTTTCCTCGTCTCCACAGAAAGACTTGCAGCCCAAGAACGGGTTCAGTTCAATACAGACAACGCAGTCTCTGGAAGCTGCAGCTGGCTCTGCAGTGTCTGCGAAGCCAGCGTCTGACTCGAACGCTCCTTCCACTGTGTCGAACATGGCCTCGCTGTCGGACCCGCCCTCAGGCCCCGCCTCTCTCCTGACAACATCCAGTCAGACACCTCTCGCCACTCTTGGACATGAAGACCCCTCCTCCAATACGATTGCTCCTCCACAACACAACAATTCCCTTTCCACACCACAGAACAGCTTGGCTCCTTCCACAGTGCGGACTTCCAGCACAAGCTTACTGCATCCaaatgtggatggagactcgaGCCTGCACTCGTCTTCCTTCTCCTCGGTCTCTGCGGTGGCCCCCTCCGCCGTCCCCCCTTCCTCCACagtctcttcctcttcctcctcagccCCTGTCTCTCATAGTGCTCCTGTTCCTCCCTCCTCTTCCACGGTCAGTGCTGCCTCTGCTCAGGCCAGTCTGGGGCCAGTCAGTAGTCTGGCCATGGGCCTGAACAGTGCAGGCGGAGTTGCCTCTATTGTCCCCCccactgctgctgcagctgcgTCTTCATCGTCAGTGGCCTCAGCTTCAGCCGCACcatcatcagcttcatcacGCAGCACGGCTGCCTCAGGGAAAGCGCCTCCGAACCTGCCTCCTGGAGTGCCTCCTCTCCTGCCCAACCCCTATATCATGGCTCCTGGCCTGCTCCATGCATACCCGCCCCAGGTGTATGGCTACGATGATCTGCAGATGCTCCAGACTAGGATACCACTGGATTACTATAGCATTCCATTTGCTACGCCAACGACAGCACTGACGGGCAGAGACGGCAGTTTGACCAGCAACCCTTATTCTGCTGGTGAGCTGACGAAGTTTGGTCGCGGGGACACGTCATCTCCTTCTCCGGCCACCACGCTGGCTCAGGCCCAGCAGAGTCAGACCCAAACTCACCACACCACGCAGCAGCCCTTCCTGAACCCGGCTCTGCCCCCTGGCTACAGCTACACCAGTCTGCCGTACTACACGGGCGTGCCCGGCCTGCCCAACACTTTCCAGTACGGCCCTGCCATGTTCCCGGTAGCACCTACTTCCTCCAAACAGCATGGTGTGAATGTTGGTGTCAATGCTTCAGCCACAGCCTTCCAGCAGGCTAGTGGATACGGATCCCATGGATACAGCACTGGCTATGAGGATTTGGGCCAGGCTTCAGCAGGGAGCGGGGATTTCTGTAAGGGCGGCTACGGCAATGCtgtggctgctgctgctgccgccGCCGCCGCTGCTTCTGCTCAAAACAAACCGGCCAGCTCAGTCACCGCGCCCGGAGTGGGAGTCTCTGTTACATCCAGTAACACGGGTGTCCCTGACATTTCAGGGTCTGTTTACACAAAGACACAGtccttTGAGAAGCAGGGTTACCACGCGGCGGCAGCACCAGGCGCCTCGTTCAGTGTGCCGTCAGCACTGGGCAGCGGCGGCCCCATCAACCCCCCGGCTGCAGCGCCCTACGCCCCCGCGCCCTTCATGCACATCCTCGCTCCTCATCAGCAGCCCCACTCGCAGATGCTGCACCACCACCTACAGCAGGACGCCCAGACTGGCTCCGGACAGCGAAGTCAGAACGCTTCCATTCAACAGAAGTCCCAGATCAACAAATCTACTTACAACAGCTACAACTGGGGAGGCAATTAATTGCCCTAGTTTCCaatctggtgaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403560.2 lncRNA downstream 39378 13559889 ~ 13563949 (-) True LOC113535067
TU480772 lncRNA downstream 58922 13542003 ~ 13544405 (-) False rps27.1
TU480713 lncRNA downstream 148530 13452399 ~ 13454797 (-) True G405206
TU480641 lncRNA downstream 236551 13366437 ~ 13366776 (-) True G405144
TU480522 lncRNA downstream 384847 13218279 ~ 13218480 (-) True G405032
TU480913 lncRNA upstream 17428 13655405 ~ 13706542 (-) True G405368
TU480934 lncRNA upstream 97559 13735536 ~ 13735748 (-) True G405386
TU480985 lncRNA upstream 170506 13808483 ~ 13814892 (-) True G405419
TU480986 lncRNA upstream 177921 13815898 ~ 13872428 (-) False G405420
TU480987 lncRNA upstream 177921 13815898 ~ 13869755 (-) False G405420
XM_026928604.2 mRNA downstream 3707 13591039 ~ 13599620 (-) True hax1
XM_034301479.1 mRNA downstream 16777 13575684 ~ 13586550 (-) True aqp10b
XM_026928305.2 mRNA downstream 44696 13556158 ~ 13558631 (-) True cks1b
XM_034301730.1 mRNA downstream 54112 13548417 ~ 13549215 (-) True LOC113535306
XM_026928592.2 mRNA downstream 58822 13542035 ~ 13544505 (-) True rps27.1
XM_026928526.2 mRNA upstream 8290 13646267 ~ 13678291 (-) True tuft1b
XM_034301653.1 mRNA upstream 51145 13689122 ~ 13726155 (-) True cgnb
XM_034301670.1 mRNA upstream 91150 13729127 ~ 13734761 (-) True pygo2
XM_026928285.2 mRNA upstream 91150 13729127 ~ 13734755 (-) False pygo2
XM_034301583.1 mRNA upstream 108901 13746878 ~ 13750446 (-) False s100s
TU480779 other downstream 44707 13556156 ~ 13558620 (-) False cks1b
TU480639 other downstream 210592 13389964 ~ 13392735 (-) False dpm3
TU480489 other downstream 462212 13140694 ~ 13141115 (-) True G404999
trnav-cac_26 other downstream 1023676 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 1024526 12578729 ~ 12578801 (-) True trnav-aac_26
TU480964 other upstream 121784 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 121784 13759761 ~ 13761555 (-) True s100a11
XR_004577571.1 other upstream 443395 14081372 ~ 14083846 (-) True npy
TU481171 other upstream 476642 14114619 ~ 14119658 (-) True G405588
trnat-ugu_14 other upstream 905240 14543217 ~ 14543289 (-) True trnat-ugu_14

Expression Profile