Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403560.2 |
| length | 225 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 3 |
| gene id | LOC113535067 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13559889 ~ 13563949 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480772 | lncRNA | downstream | 15484 | 13542003 ~ 13544405 (-) | False | rps27.1 |
| TU480713 | lncRNA | downstream | 105092 | 13452399 ~ 13454797 (-) | True | G405206 |
| TU480641 | lncRNA | downstream | 193113 | 13366437 ~ 13366776 (-) | True | G405144 |
| TU480522 | lncRNA | downstream | 341409 | 13218279 ~ 13218480 (-) | True | G405032 |
| TU480487 | lncRNA | downstream | 419234 | 13140420 ~ 13140655 (-) | True | G404997 |
| TU480893 | lncRNA | upstream | 37078 | 13601027 ~ 13605892 (-) | True | G405353 |
| TU480913 | lncRNA | upstream | 91456 | 13655405 ~ 13706542 (-) | True | G405368 |
| TU480934 | lncRNA | upstream | 171587 | 13735536 ~ 13735748 (-) | True | G405386 |
| TU480985 | lncRNA | upstream | 244534 | 13808483 ~ 13814892 (-) | True | G405419 |
| TU480986 | lncRNA | upstream | 251949 | 13815898 ~ 13872428 (-) | False | G405420 |
| XM_026928305.2 | mRNA | downstream | 1258 | 13556158 ~ 13558631 (-) | True | cks1b |
| XM_034301730.1 | mRNA | downstream | 10674 | 13548417 ~ 13549215 (-) | True | LOC113535306 |
| XM_026928592.2 | mRNA | downstream | 15384 | 13542035 ~ 13544505 (-) | True | rps27.1 |
| XM_034301491.1 | mRNA | downstream | 33789 | 13489949 ~ 13526100 (-) | True | chrna11 |
| XM_034301492.1 | mRNA | downstream | 116803 | 13412968 ~ 13443086 (-) | False | trim46b |
| XM_034301479.1 | mRNA | upstream | 11735 | 13575684 ~ 13586550 (-) | True | aqp10b |
| XM_026928604.2 | mRNA | upstream | 27090 | 13591039 ~ 13599620 (-) | True | hax1 |
| XM_034301811.1 | mRNA | upstream | 39378 | 13603327 ~ 13638125 (-) | False | ubap2l |
| XM_034301812.1 | mRNA | upstream | 39378 | 13603327 ~ 13637977 (-) | False | ubap2l |
| XM_034301810.1 | mRNA | upstream | 39378 | 13603327 ~ 13637977 (-) | True | ubap2l |
| TU480779 | other | downstream | 1269 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480639 | other | downstream | 167154 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480489 | other | downstream | 418774 | 13140694 ~ 13141115 (-) | True | G404999 |
| trnav-cac_26 | other | downstream | 980238 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 981088 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| TU480964 | other | upstream | 195812 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 195812 | 13759761 ~ 13761555 (-) | True | s100a11 |
| XR_004577571.1 | other | upstream | 517423 | 14081372 ~ 14083846 (-) | True | npy |
| TU481171 | other | upstream | 550670 | 14114619 ~ 14119658 (-) | True | G405588 |
| trnat-ugu_14 | other | upstream | 979268 | 14543217 ~ 14543289 (-) | True | trnat-ugu_14 |
