RNA id: XR_004577543.1


Basic Information

Item Value
RNA id XR_004577543.1
length 439
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC117596419
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 414465 ~ 417319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTACACCACAGACACGAAATGGCGTCGGGAGAAGGGAAAGGATTTGGTACATTAGAAGTGAGATGAACAGCACAGGTGTGGATCAGGAGACATCAACAGGATGATAAGGATGGCGAGTACTTCAAGGCCTTTGTAACACATGAGGCTCcttgttttaataaaatcttcCTGAGTGAACCCAAACACATACTCCTGAAGTACAGATACCAATGGCTCTGGTGTGCACCACTTTTGTTCTTCATCATCCTGATCATCTTCTTGCTCATCTGTAATGGACAGGTGAAGATTCAATATTGGAAAGTGAATATTCATAATGGTCTTACAGATTGTACCAATAATTTAATGATGAATGCTATGTagtcatggaaaaaagaaagtacaccctctttcatttctatgtttttatttatcagcacaTAAAtgacaattgtgtggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472224 lncRNA downstream 107056 307118 ~ 307409 (-) True G398158
XR_004577548.1 lncRNA downstream 108592 305073 ~ 305873 (-) False LOC117596423
XR_004577547.1 lncRNA downstream 108592 305073 ~ 305873 (-) True LOC117596423
XR_004577546.1 lncRNA downstream 108592 305279 ~ 305873 (-) False LOC117596423
TU472206 lncRNA downstream 221332 169832 ~ 193133 (-) True G398140
TU472424 lncRNA upstream 177799 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 225083 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 424617 841936 ~ 846790 (-) True G398393
TU472521 lncRNA upstream 430426 847745 ~ 848753 (-) True G398394
TU472522 lncRNA upstream 433131 850450 ~ 851339 (-) True G398395
XM_026911533.2 mRNA downstream 15279 373143 ~ 399186 (-) False LOC113525089
XM_034301540.1 mRNA downstream 15279 373143 ~ 399186 (-) True LOC113525089
XM_026911527.2 mRNA downstream 63896 341071 ~ 350569 (-) False LOC113525087
XM_026911528.2 mRNA downstream 63896 341071 ~ 350569 (-) True LOC113525087
XM_034301536.1 mRNA downstream 75116 328861 ~ 339349 (-) False LOC113525084
XM_026911532.2 mRNA upstream 698 418017 ~ 459183 (-) False LOC113525088
XM_026911531.2 mRNA upstream 698 418017 ~ 459183 (-) False LOC113525088
XM_026911529.2 mRNA upstream 698 418017 ~ 459183 (-) False LOC113525088
XM_026911530.2 mRNA upstream 698 418017 ~ 458810 (-) True LOC113525088
XM_034301441.1 mRNA upstream 56431 473750 ~ 481932 (-) True LOC117596396
TU472228 other downstream 88920 319734 ~ 325545 (-) False pick1
trnar-ccu_18 other downstream 103810 310583 ~ 310655 (-) True trnar-ccu_18
TU472265 other upstream 57247 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 322924 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 468383 885702 ~ 890280 (-) True LOC117596444
TU472487 other upstream 482209 899528 ~ 906361 (-) False fam234b
XR_004577594.1 other upstream 490306 907625 ~ 907779 (-) True LOC117596481

Expression Profile