RNA id: XR_004577546.1


Basic Information

Item Value
RNA id XR_004577546.1
length 250
lncRNA type intronic
GC content 0.59
exon number 3
gene id LOC117596423
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 305073 ~ 305873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTTCCCCCTTACAGAGGTACACGCTCCGTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGCTCCCCCCTTACAGAGGTACACGCTCCCTACACAGAACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472206 lncRNA downstream 112146 169832 ~ 193133 (-) True G398140
TU472201 lncRNA downstream 197504 107329 ~ 107775 (-) True G398135
TU472224 lncRNA upstream 1245 307118 ~ 307409 (-) True G398158
XR_004577543.1 lncRNA upstream 108592 414465 ~ 417319 (-) True LOC117596419
TU472424 lncRNA upstream 289245 595118 ~ 595989 (-) True G398304
TU472461 lncRNA upstream 336529 642402 ~ 644009 (-) True G398338
TU472520 lncRNA upstream 536063 841936 ~ 846790 (-) True G398393
XM_034301547.1 mRNA downstream 18142 146928 ~ 287137 (-) True LOC117596420
XM_034301546.1 mRNA downstream 116096 146928 ~ 189183 (-) False LOC117596420
XM_034301549.1 mRNA downstream 188512 79388 ~ 116767 (-) False LOC117596421
XM_034301553.1 mRNA upstream 6535 312408 ~ 324714 (-) True pick1
XM_034301536.1 mRNA upstream 22988 328861 ~ 339349 (-) False LOC113525084
XM_034301537.1 mRNA upstream 22988 328861 ~ 339056 (-) True LOC113525084
XM_034301539.1 mRNA upstream 22988 328861 ~ 339039 (-) False LOC113525084
XM_026911527.2 mRNA upstream 35198 341071 ~ 350569 (-) False LOC113525087
trnar-ccu_18 other upstream 4710 310583 ~ 310655 (-) True trnar-ccu_18
TU472228 other upstream 13861 319734 ~ 325545 (-) False pick1
TU472265 other upstream 168693 474566 ~ 482008 (-) False LOC117596396
TU472485 other upstream 434370 740243 ~ 890280 (-) False LOC117596444
TU472486 other upstream 579829 885702 ~ 890280 (-) True LOC117596444

Expression Profile