Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577551.1 |
| length | 564 |
| lncRNA type | intronic |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117596429 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 14183486 ~ 14191755 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU481157 | lncRNA | downstream | 106336 | 14076442 ~ 14077150 (-) | True | G405575 |
| TU480986 | lncRNA | downstream | 311058 | 13815898 ~ 13872428 (-) | False | G405420 |
| TU480987 | lncRNA | downstream | 313731 | 13815898 ~ 13869755 (-) | False | G405420 |
| TU480988 | lncRNA | downstream | 343653 | 13815898 ~ 13839833 (-) | True | G405420 |
| TU480985 | lncRNA | downstream | 368594 | 13808483 ~ 13814892 (-) | True | G405419 |
| TU481288 | lncRNA | upstream | 64769 | 14256524 ~ 14329200 (-) | True | G405681 |
| TU481287 | lncRNA | upstream | 113184 | 14304939 ~ 14329200 (-) | False | G405681 |
| TU481309 | lncRNA | upstream | 121984 | 14313739 ~ 14314834 (-) | True | G405701 |
| TU481315 | lncRNA | upstream | 187137 | 14378892 ~ 14385650 (-) | True | G405707 |
| TU481349 | lncRNA | upstream | 283725 | 14475480 ~ 14478639 (-) | False | tpbga |
| XM_034301504.1 | mRNA | downstream | 14890 | 14139944 ~ 14168596 (-) | False | mpp6b |
| XM_034301505.1 | mRNA | downstream | 14896 | 14139944 ~ 14168590 (-) | True | mpp6b |
| XM_026928309.2 | mRNA | downstream | 99640 | 14081372 ~ 14083846 (-) | False | npy |
| XM_026928422.2 | mRNA | downstream | 109311 | 14067317 ~ 14074175 (-) | False | ccdc126 |
| XM_034301712.1 | mRNA | downstream | 109311 | 14067317 ~ 14074175 (-) | False | ccdc126 |
| XM_026928095.2 | mRNA | upstream | 4200 | 14195955 ~ 14218170 (-) | False | tbc1d5 |
| XM_026928093.2 | mRNA | upstream | 4200 | 14195955 ~ 14218170 (-) | True | tbc1d5 |
| XM_026928094.2 | mRNA | upstream | 5039 | 14196794 ~ 14212305 (-) | False | tbc1d5 |
| XM_026928097.2 | mRNA | upstream | 5098 | 14196853 ~ 14218170 (-) | False | tbc1d5 |
| XM_034301478.1 | mRNA | upstream | 129110 | 14320865 ~ 14388466 (-) | True | arid1ab |
| TU481171 | other | downstream | 63828 | 14114619 ~ 14119658 (-) | True | G405588 |
| XR_004577571.1 | other | downstream | 99640 | 14081372 ~ 14083846 (-) | True | npy |
| TU480965 | other | downstream | 421931 | 13759761 ~ 13761555 (-) | True | s100a11 |
| TU480964 | other | downstream | 421970 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480779 | other | downstream | 624866 | 13556156 ~ 13558620 (-) | False | cks1b |
| trnat-ugu_14 | other | upstream | 351462 | 14543217 ~ 14543289 (-) | True | trnat-ugu_14 |
| trnat-ugu_15 | other | upstream | 354351 | 14546106 ~ 14546178 (-) | True | trnat-ugu_15 |
| TU481617 | other | upstream | 775721 | 14967476 ~ 15013988 (-) | True | G405961 |
