Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577563.1 |
| length | 569 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117596437 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 11327698 ~ 11362956 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577564.1 | lncRNA | downstream | 67307 | 11256791 ~ 11260391 (-) | True | LOC117596438 |
| TU479108 | lncRNA | downstream | 113860 | 11211886 ~ 11213838 (-) | False | G403823 |
| TU479111 | lncRNA | downstream | 113860 | 11211886 ~ 11213838 (-) | True | G403823 |
| TU478957 | lncRNA | downstream | 176519 | 11150807 ~ 11151179 (-) | True | G403717 |
| TU478955 | lncRNA | downstream | 188572 | 11138782 ~ 11139126 (-) | True | G403715 |
| TU479143 | lncRNA | upstream | 32781 | 11395737 ~ 11396040 (-) | True | G403851 |
| TU479193 | lncRNA | upstream | 168337 | 11531293 ~ 11533016 (-) | True | G403893 |
| TU479300 | lncRNA | upstream | 305807 | 11668763 ~ 11696191 (-) | False | G403981 |
| TU479299 | lncRNA | upstream | 308711 | 11671667 ~ 11688373 (-) | True | G403981 |
| TU479303 | lncRNA | upstream | 316299 | 11679255 ~ 11680996 (-) | True | G403982 |
| XM_026942217.2 | mRNA | downstream | 53386 | 11243505 ~ 11274312 (-) | True | LOC113543771 |
| XM_026942428.2 | mRNA | downstream | 330702 | 10991712 ~ 10996996 (-) | True | stmn1a |
| XM_026942218.2 | mRNA | downstream | 911980 | 10412385 ~ 10415718 (-) | True | cited4a |
| XM_026942162.2 | mRNA | downstream | 1112817 | 10203813 ~ 10214881 (-) | True | si:ch211-30b16.2 |
| XM_034301768.1 | mRNA | downstream | 1144932 | 10121543 ~ 10182766 (-) | True | LOC113543865 |
| XM_034301644.1 | mRNA | upstream | 21237 | 11384193 ~ 11397339 (-) | True | LOC113543744 |
| XM_034301801.1 | mRNA | upstream | 56197 | 11419153 ~ 11430318 (-) | True | LOC113543901 |
| XM_026942191.2 | mRNA | upstream | 85499 | 11448455 ~ 11498259 (-) | True | LOC113543760 |
| XM_026942193.2 | mRNA | upstream | 88964 | 11451920 ~ 11498259 (-) | False | LOC113543760 |
| XM_026942192.2 | mRNA | upstream | 88964 | 11451920 ~ 11498148 (-) | False | LOC113543760 |
| XR_003404459.1 | other | downstream | 822513 | 10505048 ~ 10505185 (-) | True | LOC113543918 |
| XR_003404460.2 | other | downstream | 823373 | 10504188 ~ 10504325 (-) | True | LOC113543919 |
| XR_003404458.1 | other | downstream | 823824 | 10503793 ~ 10503874 (-) | True | LOC113543917 |
| XR_004577593.1 | other | downstream | 824337 | 10503289 ~ 10503361 (-) | True | LOC117596479 |
| TU477891 | other | downstream | 1911491 | 9387002 ~ 9416207 (-) | False | triqk |
| trnaa-ugc_19 | other | upstream | 77708 | 11440664 ~ 11440735 (-) | True | trnaa-ugc_19 |
| trnap-ugg_24 | other | upstream | 78559 | 11441515 ~ 11441586 (-) | True | trnap-ugg_24 |
| TU479536 | other | upstream | 414413 | 11777369 ~ 11779203 (-) | False | si:ch73-347e22.4 |
| trnay-gua_12 | other | upstream | 447427 | 11810383 ~ 11810470 (-) | True | trnay-gua_12 |
| trnay-gua_13 | other | upstream | 448921 | 11811877 ~ 11811964 (-) | True | trnay-gua_13 |
