RNA id: XR_004577564.1


Basic Information

Item Value
RNA id XR_004577564.1
length 1137
lncRNA type intronic
GC content 0.41
exon number 3
gene id LOC117596438
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11256791 ~ 11260391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACTGCCATACTATTTAAGGActcaacacacattcacacacgcacgcatgcacacactctctttGCAAACTCATGCTCTGTGTCCTAGCTACTAGTTTATTCCAAGCCTTTCATTCTGTTATATTATTACCtggcttttcttctttctgttttttggttCATTGATTATTGCCTAGTCTAGTTCATGTTGTTTGTTGAtcacctgaccattgcctgtttcctgtttacaGTTTTGCCTCTCAATTTGGATCTGAGTTCAAACTTTCAgcaAGATGACATAGGATGTATTTGTTTTGTCTGCCTCTAAATTACTATTACAAGGTTATCAAAGTGACTCAGAGCAGCTCAGGAACACTGCAATCTCTGCCCTGACTCAGTAATGAcgatttatttgttaatttgctTTCCTTTTAATCCGATGAATCGTATCAGCAAGATCCAGCGTAGTCAGCTAAGTTTTTGAGAGGGAAGAGGAAAGCAGAGAACCAGCAGGGAACCGCCACAGACATgcagagaacatgcaaaacctaGCACAGATGTTAACCGAAGCTTGGATTTGAATCCTGGATCGTGTGGCTGTGAGACAGCAGCACTACCTGCTGCCCCGTACTTCCACACAGGTTTTCAGTACTGACAAAGAGACAAAGCCATTGCAAACACGCTGAACTACAATCACTTCTGTGTTGACATGTGCAAATTATGTCTTATCAATGTTGCATGCAGCTTGTTTGCTAATTAGGAAGATGTTGGCACAAtgcctttatttttaaattgtgtgcTCTTTTCAGCCATCATTGAGTACAATGTGTGAGCTATTGTTTAACCGGGAAACACACAACTGACTGCAGTCAGTACTGGAATATTACAAAAATGCATGAACAGTAATGAAAAACAACCTTGTGTGGACATCTTCCCAATTAGCAAATGAGCCATGGATGACATTATTGACGTGTAATTTGTGCCACTGCTGGCTAGATGTTTGCGTGCTATTTGGGTAGTTGGTGCTTTTGAAATTCGACAGCCACAAAAACTACAATCTTTGCATTTTTTGGCCTTCCTCACCATTTTCCTCACTGTGCGGTTTGGCAGTATGTTCAGGCATCTTATTCCTGGCATATTTTACATACAGttgggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479108 lncRNA downstream 42953 11211886 ~ 11213838 (-) False G403823
TU479111 lncRNA downstream 42953 11211886 ~ 11213838 (-) True G403823
TU478957 lncRNA downstream 105612 11150807 ~ 11151179 (-) True G403717
TU478955 lncRNA downstream 117665 11138782 ~ 11139126 (-) True G403715
XR_004577592.1 lncRNA downstream 125603 11120569 ~ 11131188 (-) True LOC117596478
XR_004577563.1 lncRNA upstream 67307 11327698 ~ 11362956 (-) True LOC117596437
TU479143 lncRNA upstream 135346 11395737 ~ 11396040 (-) True G403851
TU479193 lncRNA upstream 270902 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 408372 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 411276 11671667 ~ 11688373 (-) True G403981
XM_026942428.2 mRNA downstream 259795 10991712 ~ 10996996 (-) True stmn1a
XM_026942218.2 mRNA downstream 841073 10412385 ~ 10415718 (-) True cited4a
XM_026942162.2 mRNA downstream 1041910 10203813 ~ 10214881 (-) True si:ch211-30b16.2
XM_034301768.1 mRNA downstream 1074025 10121543 ~ 10182766 (-) True LOC113543865
XM_026942287.2 mRNA downstream 1143275 10096124 ~ 10113516 (-) True ube2e1
XM_034301644.1 mRNA upstream 123802 11384193 ~ 11397339 (-) True LOC113543744
XM_034301801.1 mRNA upstream 158762 11419153 ~ 11430318 (-) True LOC113543901
XM_026942191.2 mRNA upstream 188064 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA upstream 191529 11451920 ~ 11498259 (-) False LOC113543760
XM_026942192.2 mRNA upstream 191529 11451920 ~ 11498148 (-) False LOC113543760
XR_003404459.1 other downstream 751606 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 752466 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 752917 10503793 ~ 10503874 (-) True LOC113543917
XR_004577593.1 other downstream 753430 10503289 ~ 10503361 (-) True LOC117596479
TU477891 other downstream 1840584 9387002 ~ 9416207 (-) False triqk
trnaa-ugc_19 other upstream 180273 11440664 ~ 11440735 (-) True trnaa-ugc_19
trnap-ugg_24 other upstream 181124 11441515 ~ 11441586 (-) True trnap-ugg_24
TU479536 other upstream 516978 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 549992 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 551486 11811877 ~ 11811964 (-) True trnay-gua_13

Expression Profile