RNA id: trnap-ugg_24


Basic Information

Item Value
RNA id trnap-ugg_24
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg_24
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11441515 ~ 11441586 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479143 lncRNA downstream 45475 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 78559 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 181124 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 227677 11211886 ~ 11213838 (-) False G403823
TU479193 lncRNA upstream 89707 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 227177 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 230081 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 237669 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 250118 11691704 ~ 11696191 (-) False G403981
XM_034301801.1 mRNA downstream 11197 11419153 ~ 11430318 (-) True LOC113543901
XM_034301644.1 mRNA downstream 44176 11384193 ~ 11397339 (-) True LOC113543744
XM_026942217.2 mRNA downstream 167203 11243505 ~ 11274312 (-) True LOC113543771
XM_026942428.2 mRNA downstream 444519 10991712 ~ 10996996 (-) True stmn1a
XM_026942218.2 mRNA downstream 1025797 10412385 ~ 10415718 (-) True cited4a
XM_026942191.2 mRNA upstream 6869 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA upstream 10334 11451920 ~ 11498259 (-) False LOC113543760
XM_026942192.2 mRNA upstream 10334 11451920 ~ 11498148 (-) False LOC113543760
XM_026942197.2 mRNA upstream 10334 11451920 ~ 11481325 (-) False LOC113543760
XM_026942195.2 mRNA upstream 10334 11451920 ~ 11465478 (-) False LOC113543760
trnaa-ugc_19 other downstream 780 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 936330 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 937190 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 937641 10503793 ~ 10503874 (-) True LOC113543917
XR_004577593.1 other downstream 938154 10503289 ~ 10503361 (-) True LOC117596479
TU479536 other upstream 335783 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 368797 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 370291 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 371782 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 373299 11814885 ~ 11814972 (-) True trnay-gua_15

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-394 True 72 mRNA 0.61 1 NW_023494071.1 60740 ~ 60811 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_604 True 72 tRNA 0.61 1 NC_053123.1 31210 ~ 31281 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_3008 True 72 tRNA 0.61 1 NW_025048646.1 136601 ~ 136672 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_604 True 73 tRNA 0.55 1 NC_056702.1 26145276 ~ 26145348 (+)
mexican tetra (Astyanax mexicanus) trnap-ugg_79 True 72 tRNA 0.61 1 NW_019172929.1 2485350 ~ 2485421 (+)