RNA id: trnat-ugu_14


Basic Information

Item Value
RNA id trnat-ugu_14
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnat-ugu_14
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14543217 ~ 14543289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCCAGGGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTTGTGAGTTCAATCCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481349 lncRNA downstream 64578 14475480 ~ 14478639 (-) False tpbga
TU481315 lncRNA downstream 157567 14378892 ~ 14385650 (-) True G405707
TU481288 lncRNA downstream 214017 14256524 ~ 14329200 (-) True G405681
TU481287 lncRNA downstream 214017 14304939 ~ 14329200 (-) False G405681
TU481309 lncRNA downstream 228383 14313739 ~ 14314834 (-) True G405701
TU481546 lncRNA upstream 75360 14618649 ~ 14686310 (-) True G405900
TU481548 lncRNA upstream 76049 14619338 ~ 14654751 (-) True G405901
TU481553 lncRNA upstream 101564 14644853 ~ 14966111 (-) True G405906
TU481557 lncRNA upstream 144734 14688023 ~ 14720906 (-) True G405909
TU481565 lncRNA upstream 156979 14700268 ~ 14704312 (-) True G405917
XM_026927893.2 mRNA downstream 51954 14481937 ~ 14491263 (-) True tmem222b
XM_026927974.2 mRNA downstream 64140 14475476 ~ 14479077 (-) True tpbga
XM_026928455.2 mRNA downstream 72399 14460392 ~ 14470818 (-) False kdf1b
XM_026928456.2 mRNA downstream 72505 14460392 ~ 14470712 (-) False kdf1b
XM_026928453.2 mRNA downstream 72505 14460392 ~ 14470712 (-) False kdf1b
XM_034301474.1 mRNA upstream 8755 14552044 ~ 14586242 (-) True epb41a
XM_026928370.2 mRNA upstream 55206 14598495 ~ 14614761 (-) True zbtb22b
XM_034301734.1 mRNA upstream 79392 14622681 ~ 14637333 (-) True ctdp1
XM_026928369.2 mRNA upstream 109055 14652344 ~ 14670040 (-) True daxx
XM_026928308.2 mRNA upstream 316965 14860254 ~ 14867598 (-) True gnb3b
TU481171 other downstream 423559 14114619 ~ 14119658 (-) True G405588
XR_004577571.1 other downstream 459371 14081372 ~ 14083846 (-) True npy
TU480965 other downstream 781662 13759761 ~ 13761555 (-) True s100a11
TU480964 other downstream 781701 13759761 ~ 13761516 (-) False s100a11
TU480779 other downstream 984597 13556156 ~ 13558620 (-) False cks1b
trnat-ugu_15 other upstream 2817 14546106 ~ 14546178 (-) True trnat-ugu_15
TU481617 other upstream 424187 14967476 ~ 15013988 (-) True G405961