RNA id: trnay-gua_12


Basic Information

Item Value
RNA id trnay-gua_12
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnay-gua_12
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11810383 ~ 11810470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479539 lncRNA downstream 20218 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 44616 11763111 ~ 11765767 (-) True G404060
TU479300 lncRNA downstream 114192 11668763 ~ 11696191 (-) False G403981
TU479573 lncRNA upstream 10580 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 160272 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 186600 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 189796 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 314987 12125457 ~ 12125840 (-) True G404282
XM_034301427.1 mRNA downstream 602 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 9645 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 9656 11799496 ~ 11800727 (-) False LOC113543858
XM_026942107.2 mRNA downstream 15966 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 20204 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_026928288.2 mRNA upstream 21736 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA upstream 21736 11832206 ~ 11842609 (-) False tomm40l
XM_026928125.2 mRNA upstream 34083 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 34083 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 34083 11844553 ~ 11863767 (-) False LOC113535038
TU479536 other downstream 31180 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnap-ugg_24 other downstream 368797 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 369648 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1305198 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1306058 10504188 ~ 10504325 (-) True LOC113543919
trnay-gua_13 other upstream 1407 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 2898 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 4415 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_16 other upstream 5913 11816383 ~ 11816470 (-) True trnay-gua_16
trnay-gua_17 other upstream 7417 11817887 ~ 11817974 (-) True trnay-gua_17