RNA id: trnay-gua_16


Basic Information

Item Value
RNA id trnay-gua_16
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnay-gua_16
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11816383 ~ 11816470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479539 lncRNA downstream 26218 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 50616 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 120192 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 128010 11671667 ~ 11688373 (-) True G403981
TU479573 lncRNA upstream 4580 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 154272 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 180600 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 183796 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 308987 12125457 ~ 12125840 (-) True G404282
XM_034301427.1 mRNA downstream 6602 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 15645 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 15656 11799496 ~ 11800727 (-) False LOC113543858
XM_026942107.2 mRNA downstream 21966 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 26204 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_026928288.2 mRNA upstream 15736 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA upstream 15736 11832206 ~ 11842609 (-) False tomm40l
XM_026928125.2 mRNA upstream 28083 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 28083 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 28083 11844553 ~ 11863767 (-) False LOC113535038
trnay-gua_15 other downstream 1411 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_14 other downstream 2928 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_13 other downstream 4419 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_12 other downstream 5913 11810383 ~ 11810470 (-) True trnay-gua_12
TU479536 other downstream 37180 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_17 other upstream 1417 11817887 ~ 11817974 (-) True trnay-gua_17
trnay-gua_18 other upstream 2914 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_19 other upstream 4407 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_20 other upstream 5907 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_21 other upstream 7406 11823876 ~ 11823963 (-) True trnay-gua_21