RNA id: trnay-gua_18


Basic Information

Item Value
RNA id trnay-gua_18
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnay-gua_18
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11819384 ~ 11819471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479539 lncRNA downstream 29219 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 53617 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 123193 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 131011 11671667 ~ 11688373 (-) True G403981
TU479573 lncRNA upstream 1579 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 151271 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 177599 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 180795 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 305986 12125457 ~ 12125840 (-) True G404282
XM_034301427.1 mRNA downstream 9603 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 18646 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 18657 11799496 ~ 11800727 (-) False LOC113543858
XM_026942107.2 mRNA downstream 24967 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 29205 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_026928288.2 mRNA upstream 12735 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA upstream 12735 11832206 ~ 11842609 (-) False tomm40l
XM_026928125.2 mRNA upstream 25082 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 25082 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 25082 11844553 ~ 11863767 (-) False LOC113535038
trnay-gua_17 other downstream 1410 11817887 ~ 11817974 (-) True trnay-gua_17
trnay-gua_16 other downstream 2914 11816383 ~ 11816470 (-) True trnay-gua_16
trnay-gua_15 other downstream 4412 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_14 other downstream 5929 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_13 other downstream 7420 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_19 other upstream 1406 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_20 other upstream 2906 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_21 other upstream 4405 11823876 ~ 11823963 (-) True trnay-gua_21
TU480085 other upstream 611524 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 750993 12570464 ~ 12570536 (-) True trnav-cac_22