RNA id: trnay-gua_20


Basic Information

Item Value
RNA id trnay-gua_20
length 73
RNA type tRNA
GC content 0.53
exon number 2
gene id trnay-gua_20
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11822377 ~ 11822464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGTCGCTGGTTCAAATCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479573 lncRNA downstream 951 11821050 ~ 11821426 (-) True G404198
TU479539 lncRNA downstream 32212 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479385 lncRNA downstream 56610 11763111 ~ 11765767 (-) True G404060
TU479297 lncRNA downstream 126186 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 134004 11671667 ~ 11688373 (-) True G403981
TU479616 lncRNA upstream 148278 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 174606 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 177802 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 302993 12125457 ~ 12125840 (-) True G404282
TU479760 lncRNA upstream 323619 12146083 ~ 12147663 (-) False grin2da
XM_034301427.1 mRNA downstream 12596 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA downstream 21639 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA downstream 21650 11799496 ~ 11800727 (-) False LOC113543858
XM_026942107.2 mRNA downstream 27960 11792220 ~ 11794417 (-) True apoea
XM_026942200.2 mRNA downstream 32198 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_026928288.2 mRNA upstream 9742 11832206 ~ 11842945 (-) True tomm40l
XM_034301426.1 mRNA upstream 9742 11832206 ~ 11842609 (-) False tomm40l
XM_026928125.2 mRNA upstream 22089 11844553 ~ 11863767 (-) False LOC113535038
XM_026928124.2 mRNA upstream 22089 11844553 ~ 11863767 (-) False LOC113535038
XM_026928123.2 mRNA upstream 22089 11844553 ~ 11863767 (-) False LOC113535038
trnay-gua_19 other downstream 1413 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 2906 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 4403 11817887 ~ 11817974 (-) True trnay-gua_17
trnay-gua_16 other downstream 5907 11816383 ~ 11816470 (-) True trnay-gua_16
trnay-gua_15 other downstream 7405 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_21 other upstream 1412 11823876 ~ 11823963 (-) True trnay-gua_21
TU480085 other upstream 608531 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 748000 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 749129 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 751135 12573599 ~ 12573671 (-) True trnav-cac_24

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnay-gua-287 True 73 mRNA 0.53 2 NC_048585.1 59859016 ~ 59859102 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_1484 True 73 tRNA 0.53 2 NC_053134.1 10195784 ~ 10195870 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1484 True 72 tRNA 0.56 1 NC_056709.1 1109604 ~ 1109675 (-)
mexican tetra (Astyanax mexicanus) trnay-gua_54 True 73 tRNA 0.53 2 NW_019171900.1 212556 ~ 212642 (-)