RNA id: TCONS_00008152


Basic Information

Item Value
RNA id TCONS_00008152
length 734
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_004266
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36280523 ~ 36341189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcctcctgttgaaaaacgtcataagaacaatgtttagtggctcaatgtattacagcagtgtttttaaaagtctaaacactttattgatatagtatacaaccaagcacaagtggtcaaaATACAAACGAGGCACAGGTGattaaagtattaagcgtttctcccaaagtaaagtgtgtctgaaccaggtccaagcaaaatgccagtacgtgtctgtagctccgctcactttccgcctctttgcccttgtttggtatcccgccgtgggtgtggtGACCCATTGTGTTCATAAATGCAACAAAAGCATGAGTGAATAAGGTAATTCTGGAGAAAAAATAGCAGCATGCACAGATCCTCATGTAAGGCTTTTGGGCCTTCTTACCTTGAATTTTATAAGGCATTTTGCCATGCATTCCTGATGCATTACGTTGTTCATGTTTCACTAGATTTTCCACTGACGAAGGCCAGTGTTGGCATACGCATAACTTCACTGATGATCCAATATACTTCACTGGCCTGGCATCAGAACCTGGTGCCCGATCCATGAATGTCAGCTTGTGGGGCTACAGGGACACCATCCTGAATCAATACTGGGTTTCTGTCACTGTCGACTTCAGACAGCTGCTCTCTAGAGACTGCCAGGAGAATGACTACATCCAGTGGCTCGCTCACTCAAGCGATATCAACAGCCCCACGGATGGATGCGTGCTGGGATACAAGGAAAGGTTTTTACGGTT

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0006895 Golgi to endosome transport biological_process
GO:0006897 endocytosis biological_process
GO:0016050 vesicle organization biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2329 Predicted to be involved in Golgi to endosome transport; endocytosis; and vesicle organization. Predicted to be located in several cellular components, including Golgi cisterna membrane; bounding membrane of organelle; and nuclear membrane. Predicted to be active in Golgi apparatus. Predicted to be integral component of membrane. Is expressed in cardiovascular system; central nervous system; pigment cell; and tail bud. Orthologous to human SORT1 (sortilin 1).

Ensembl:

ensembl_id ENSDART00000134481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008839 lncRNA downstream 44052 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 549364 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 549364 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008837 lncRNA downstream 549367 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008484 lncRNA downstream 549368 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008841 lncRNA upstream 192710 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 192710 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 192710 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008842 lncRNA upstream 277242 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008843 lncRNA upstream 290770 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008146 mRNA downstream 11144 36254284 ~ 36279664 (-) False XLOC_004265
TCONS_00008148 mRNA downstream 11188 36258538 ~ 36279620 (-) False XLOC_004265
TCONS_00008149 mRNA downstream 11206 36263612 ~ 36279602 (-) True XLOC_004265
TCONS_00008147 mRNA downstream 26922 36255064 ~ 36263886 (-) False XLOC_004265
TCONS_00008144 mRNA downstream 60645 36215698 ~ 36230163 (-) False XLOC_004263
TCONS_00008153 mRNA upstream 51315 36342997 ~ 36350993 (-) False XLOC_004267
TCONS_00008154 mRNA upstream 51593 36343275 ~ 36350421 (-) False XLOC_004267
TCONS_00008155 mRNA upstream 53854 36345536 ~ 36350876 (-) True XLOC_004267
TCONS_00008156 mRNA upstream 130551 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA upstream 130633 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008119 other downstream 1065669 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1824295 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1935146 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2324536 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2919441 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1007689 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1883389 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2656305 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2798193 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3890999 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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