RNA id: TCONS_00008156


Basic Information

Item Value
RNA id TCONS_00008156
length 3554
RNA type mRNA
GC content 0.49
exon number 17
gene id XLOC_004268
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36422233 ~ 36475124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACGTGACAAGAAGATCGATGACTACGGAGTGTTATTTGTGCCTTTCTATTTCTAATGACCCTTCTTTTAAACCTTTCCCGAAAACCAGCTGTTCGTTATACGCATGCGTGCAAAGGCGCTACAAATACTAGAGCACATGCGCAGTATGTCATCTGAGAGACCGCAGATATTCACGCGCATGCGCACTATCAAAATGTTTTGTGGCCGAATCTTTATTTCGCAGCGGAATGTTGTCCTTCGAAGGAGTTTAAATAAAGAGCCggatcatttgaatttaaagGTCCAAAATGGAGCTGCCAAACTACAGCCGACAGCTCATGCAGCAGCTTCACACTTTACGAAAAGAGAAAAAGTTCTGCGACTGCTCCATCCTGGTGAGCGAAACCCCTCACCCTGCCCACAAACTGGTGTTGGCCGCCTCCAGTCTGTTATTCAAGTCTGTTCTGGAAAGTTCTGACAGCATCTCTATCGACACAGACCTGCTGTCCTCTCAGGAGTTTTCCTCTCTTCTGGATCTGGTGTACACCGGGAAACTGCCACCAGGAAAACACAACTTAACCCGCCTCATAGCCGCCGCAGACAGTCTGCAGATGTTTGATGTGGCTGTCGGCTGTAAAAACATCCTGACTGACCTCATGAAACAGACTGAGCCCATAGACCCACAGGTTATAAAGCCTGACAGTGTTGTGGAGCAGGTTAAAAGAGAAGAGAGGAATCTGCAAGAGGACAATGCAGTCGAGATGATTTCTCATGATCGAGCTGGTCTCATGAAGATCCTACAGAGAGGAAAGTCTCATGTTCAGTTTCTTGAGGCCTGGGATGCAGTTTCCACAGAAGAGCGACAGGTCATTCTGGAGATGTTCAGAGGAGATCCATCAGCAGATGAACTTTACCAGCGGTTACTGAATCTGCTGGAAGTTGAGAGAGTTCTGTCATCAAAGACAGTCCTTACTTTACTTGAGCAGCTAAAACATTCAGATCTGGAGGAGCAGGGAGATCAGAGCTGTTCTCAACCAAAAGATACTGTTCAGGGGTCCAGTGGGATTTTAGAGCGTTTATCAGAAGTAACTCATCATCTTTCCAGTGTCAACAACCTCTCAGAGATATTGACCAGTGCTGTAACCAAGTGCACAAATCAAGTGGAAAAAGAGGCGCTTCTGCAGTGCTGTTCTGCTCCGTCATCTGCAGAGGTGCTGGAAAACTTGTTATGCAAACTCCGAGAGATGTCCATAAGTGAAGAAACGTTTCTGATTCTGCTGAAtgaagtgaaggaaaaatcaacCGATCTGCTTCAACTCCTTGAAACTCTTAAAAACACCAGAGGTGTAACGACAAAAGAGAGCAATGCAGTTGATTTGTTGGGAATGTATCAGAGCAGACTTGTTGAGCTGAATCTGGACCTCCAGCTCATCAAACAAAGCCTTCAAATGGGTCCAGAGATGCCTGAAAATGACAGACAGTGTATTGAAGGTCTGCTGGTAGAGAAAGCAGATGCTGAGGTGTTTGAGAGGCTGATTTTAGCAGCGCTGGATGGTTCACTGCAGGCCGTCACTGCGTGGAGGATTCTCTTCTGGACAGAAACACACAATCCAGAGCTGCAGATCCTCATGCAGGAGCTCAAGGAGAAGCCAGAAGCTCAGAAACTACTCCAAACCAttaagGACATAGATGTGCTGTTCAAGCACAAATCACTCATTCTGGAAACCATCAGTGATTTTACAGTGCTTGAACAGGGTTTGAATGCAATGGATCATGAGACAGAGAAAGTTACTGAGTTTCTGCAGAGCTGCCGGAGAGCTGATGGAGAGCTGGAGTCGGTTGTTCAAACTGTGGACAGAGTTTTGAGTCGCGACTCCGGGTTTGCCAGTCCTCTGTGCCAGCTGATGTGTGCCAACCTGAAGAGCTTCCCTCAGCTGTCGCCTCTCAAACAAACCGGGCTTGTGTCTGACTCGGAGTGTCCTGGTAAAGCTGAGGTTGAGCAAGGAGGATCTGCTGTAGACTctgaggatgaagatgatgaagactgTAGTAGCACAGGCCGAAGGAAACCCGTGCTGGTGTCCTACAGCTGTGACTGGTGCAGGAAGACATTTGACTTTAAGTGTCGTCTGATAAAGCATAGGAAAGGCTGTGCTCTGGCACCAGGGAAAGAGCAGCGCTGTTGCGAGTGTTCAATGGCCTTTCCAACACTCAAGAGCCTCCATCAGCACTGTGTGGAAACACACGGTGGCCCTCCGGCTAAGAAGAAGAAGACTGAACATGTGGCCTGCGACATTTGTGACAAGACCTTCAAACACTCCTCCGGTCTTCTATATCACAAGCGCACTGAGCACTTTGAGGAGCGCCCGTACGCCTGTGAGGAGTGTGGAGCTAAATTCGCTGCCACCTCGTCTCTAAAGAACCACATGCGTCTTCACACCGGAGAAAAGCCTTTCCACTGCAAACACTGCGACATGAGCTTCTCTGTGGCCGCCGCTCTGTCCTACCACACAAAGAAGAAGCATGCAGAGGGTAAAATGTACTGCTGTCAGTACTGCTCGGCCTCGTTCGCACAGTCTATTGAACTGACACGTCACGTCCGCACACACACCGGAGACAAACCCTACGTCTGCAGAGAGTGTGGGAAAGGCTTCAAACAAGCCAATGGATTATCTGTGCATCTGCAGAACTTTCACAATATTACAGAGCCCCACGACTGTCAGAAATGCAGAGTGAGCTTCTCTTCTCTGGATGAACTTCGACAGCACATTCAGAAGGTTCATCCCAAAGAGCTGCACCAGTGTCCCGAATGCAGCAAGATCTACAACAGCGAAGGTGCTCTGGAGAAACACATGAACGTTCATGATGGCAACAAACCCTACAGCTGCAAGACCTGCAACAAGGCCTATCAGacTCTGTCAGGTCTGTGGTACCACAACCGTACGGTTCACCCGGAGATCTCCACCAGCCAGAGCAACAGATCCCTCAAAGCCCTGCTGCAGTGTGAGCGCTGTGACAAGAGCTTCACGAGCCACAACAGCCTGATAAAACACCAGATAACCAACCACACAGATGTGCACGTGTGGAAGTGTGTGAGCTGTGACTGTTCTCTGTCCAGTGAGCAGGAGCTCCAGCATCATGTTTGCAGTGTTCAGACTCCCGCGCTGTTCAGCTGTATGGTCTGTTCACTTCACTTCCCCTCTGAGCCTGACTTCCAGCAGCACTTCCTGTCCAAACACCTCCAGCTCGTGCAGGATGAAGCGCAGACACAGAGCTCCGCTTCACAGACGGTGGTTCAGTGTGAAGCTGCAGCAGATCCGGCAGTGGAGCAGGTGATAAACCTCCATCAGTCCCAGAGCGAGTCCTCACAGCAGGTGTTTGTGGCTCTGGCTGATCAACAGGAGACTCCGGCCGGATCAGGAATGGTGGCGGTGAGCATGGAGGATCTGCTGAACGGTACCGTGACACTGATCTGTGAACAGAGCCAATGAAAACACTCCTCCTCTAACACTGCAGTACAGCTCACACcaatcattattcattcatatgagtttaaataaacaaaaagggtCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-1704 Predicted to enable metal ion binding activity. Orthologous to human ZBTB40 (zinc finger and BTB domain containing 40).

Ensembl:

ensembl_id ENSDART00000128889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008152 lncRNA downstream 130551 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 175477 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 680789 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 680789 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008838 lncRNA downstream 680797 35720448 ~ 35741436 (-) False XLOC_004257
TCONS_00008841 lncRNA upstream 33622 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 33622 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 33622 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008842 lncRNA upstream 118154 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008843 lncRNA upstream 131682 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008153 mRNA downstream 71240 36342997 ~ 36350993 (-) False XLOC_004267
TCONS_00008155 mRNA downstream 71357 36345536 ~ 36350876 (-) True XLOC_004267
TCONS_00008154 mRNA downstream 71812 36343275 ~ 36350421 (-) False XLOC_004267
TCONS_00008150 mRNA downstream 81044 36280523 ~ 36341189 (-) False XLOC_004266
TCONS_00008151 mRNA downstream 81205 36281610 ~ 36341028 (-) False XLOC_004266
TCONS_00008159 mRNA upstream 1524 36452294 ~ 36475124 (-) False XLOC_004268
TCONS_00008160 mRNA upstream 1746 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008164 mRNA upstream 238024 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA upstream 241031 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008166 mRNA upstream 342703 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008119 other downstream 1197094 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1955720 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2066571 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2455961 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3050866 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 848601 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1724301 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2497217 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2639105 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3731911 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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