RNA id: TCONS_00008160


Basic Information

Item Value
RNA id TCONS_00008160
length 1867
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_004268
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36422233 ~ 36475124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGGCTcctcggttgcagctggaaaaagCTGCTTGGCGATGGGCAGAGGCAGTCAGACCAGAGGACATCACACATGAACATATAGAGCTGGCTTATAGGATCGCAGTGTCGGCTTGCAAAAGAGGGGCATGCAGGAGGAACTGTAAAGGAAACCCTAATTGTCTTGTTGGTATTGGGGAACAATCATGGTTGGGAGAAATTGATGAAAACACCTTCCACAACATTGATGACCCAAATTCGGAAAGAAGAGATAAGaacaCATTTGTGGGCCTGACGAACCTCGGCGCCACGTGTTACGTCAACACTTTCCTCCAGGTGTGGTTCCACAATCTGGAGCTGCGCAGAGCCTTATATAGGTTTCAGAATTCCAGAGCTGAAGGGCACAACACAGATTCAGATTATGAACCACGGACGATTTGCGAGCATCTCCAGTATCTGTTTGCACTGCTACAGAACAGCAACAGGCGATACATCGATCCTTCCGGGCTAGTGAAGGCTCTTGGGCTCGACACAGGCCAACAGCAGGATGCTCAGGAATTCTCCAAACTCTTCCTCTCACTTCTCGAAGACACACTTTCAAAGCAGAAGGACCCAAATCTCCAAAATGTCATTcaacagcagttctgtgggcagtTCTCTTATGTTACAGTATGCAACAAATGTGGACGTGAATCTCCATTACCATCACGATTTTATGAACTAGAGCTGAATATTCAAGGACATAAAAACCTCACAGAGTGTGTTACAGAGTTTCTGAAGGAGGAGAAGCTGGACGGTGATAATCGTTACTATTGCGAGAGCTGTCAGAGTAAACAGAACGCCACACGCCGGATCAAGCTGCAGAGTCTTCCTCGCACACTCAACTTTCAGCTCATGCGTTTCGTTTTTGATAGGCAAAGTGGGCATAAGAAGAAGCTCAACACCTTCATTAGTTTTCCAGAAGTTCTTGACATGGAGCCGTTTTTGGAAGGAAGAGAGGAGAAGTGCACGTATGAGCTGAGCGCGGTGTTGATTCATCGGGGTGTGAGTGCTTACTCCGGTCACTACATCGCCCACGTGAGAGACGCACACACCAACGACTGGTACAAATTTAACGATGAGGAGATCGAGAAAATGGAGGGCAAGAAACTTCAGCTGGGCATTGAGGAAGATATCGCTGAGACGGCCAAATCTCAAACCAGAAAGCCAAAATGTAGCAAAGGCTATCACTGTTCGAGGAACGCATACATGTTAGTGTATAAACAGCAGACAGAAGAGATTAACCAGACGGAGTCTCCTGTTGATGTACCAGcttttctcCAGAAGCTGGTCGAGCAGGACAACAGGAAGTTTGAGGAGTGGTGTAGTGAGATGTCAGACATGCGAAAGCAGAGTGTTGACAAAGGCAAAGCCAAACATGAGGAGGTGAAGGAGCTCTACGAATTGTTACCTGCAGAAGACGGCCAGTCCTATGAGTTTGTGCCTCTAGAGTGGTTGAAGAAATGGCTTGACGACTCCACTGCCATAAAGGAAATCGACAACAGCCAaaatgttgttttgctttaAGAAACATCGTGTTGGCTTTTAATATTGAAAGATGTTGATGCATTCTGCAAGGTTTTGTGGTCGTGCGTAACCATGACTGTGAAAAATACGGGTCGACATTTCCTCGAAGGATGTTCCATTTCAAGGAAAATCTGAATTCCTCCTCGTTTGTCGCAATGTCGTGTTCAGAGATTATGATCATATTTTGTGTGTGAAACAGTACGTCTCTGTAAATCCTTTGTTGAAAAGAAGCTTGTGACGGCACTGCAATAGAGCTCTTACATATTTAAGAGTGCATGAGCAActtgaatattaaaaaaagaataataaaataaaaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050522-197 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP48 (ubiquitin specific peptidase 48).

Ensembl:

ensembl_id ENSDART00000170678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008152 lncRNA downstream 160834 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 205760 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 711072 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 711072 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008838 lncRNA downstream 711080 35720448 ~ 35741436 (-) False XLOC_004257
TCONS_00008841 lncRNA upstream 10086 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 10086 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 10086 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008842 lncRNA upstream 94618 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008843 lncRNA upstream 108146 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008156 mRNA downstream 1746 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA downstream 5861 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008153 mRNA downstream 101523 36342997 ~ 36350993 (-) False XLOC_004267
TCONS_00008155 mRNA downstream 101640 36345536 ~ 36350876 (-) True XLOC_004267
TCONS_00008154 mRNA downstream 102095 36343275 ~ 36350421 (-) False XLOC_004267
TCONS_00008164 mRNA upstream 214488 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA upstream 217495 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008166 mRNA upstream 319167 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008167 mRNA upstream 319244 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008172 mRNA upstream 631334 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008119 other downstream 1227377 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1986003 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2096854 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2486244 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3081149 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 825065 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1700765 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2473681 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2615569 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3708375 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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