RNA id: TCONS_00008843


Basic Information

Item Value
RNA id TCONS_00008843
length 1255
lncRNA type read_through
GC content 0.38
exon number 3
gene id XLOC_004269
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36484392 ~ 36687161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAATTAACCCAGCTGGACGCACGGAAAGCATGTCCTAGGAACTGATAATTTAAAACTCACTGTCTACACTGGATACTTTAAACTATGTCCAACAAATTTATGACCTGaaacaacattttaattttataatgttgtttttgtttaacagCTCGCTTTCTCTAACATGCAGAAGGTCACCCTTCACACACAACTGGATCGATTATCGCTTCCGAGGATGTTTATGTTTGTTCACGCTTTGACTTAAGATTGTTTTGCAAAGAAGCCACGGTGTAACGTTAATGGAAAGTTCGAGAAGAAACTTATTTTGAAGGAAGAAGCCAACATTATTTGATCTGGTACAGCTGCTACATCAAAACAGAGCCATGTGCCAGCCACTGACAGGGGAAAGCTGCTGCTAATGTTAATGCATGTCCAACAAGCTCGTATTGTGTGGGTATAGAAGAAGACTGGATCGGTAACTCAGTGTCTGACTGAACTGGTGTATGGATGCTGCAGTACAGCTGGTCAACATTCttaagaagaaagaaagaattgcTGAAAATGAACTGTGTTGATAATCTGTTCAGGCTTGACAGTGGTTTGCTGTGTGTCAATGTTAATACCTTGTTTTTCTCTAtattttcttgtttctgttttttattcACCACAATATCTGAAATGCAATGCAGAAGCACCATTTCAGAACATATTTCATTAGAacttttttggattttttataCAGTAGATTAAGCTTGTGTTTTCGCCTTTGACACTTTGCACAACAGAATCATCTTTTCTCACACTCATGTGTTATGATGAATGTAGTGTTTCTCTCACTTCTTCTATATAAGTGTACTGTGGTTGGCAGAGCGAGTCTTTAACACTTACATGCGTGCgtctaaaatgctgattttggTCTAGTGAGTAAATGTTGTCGCTGTTGTGTCTGCAGCAGTGGTTAGAATTTGTGAAACCACAGTgtgttttaataatatatcaaCTTTATTTACAACTCGTATGTGAACAGAATGAGGATGATGTGATCTTCGTAATAGAATGACTCTTTTGTAAATGAAAAAAGATTTCatcacttttctggacactctaagagctttacacatttttgggtttaatcatccacctggatgacacagcGAGACCACACACTACACACCAGTTGATTAgtagagaggagacagagtaaagccaattatgatatggggatggttaggaggccatgatggacagaggccactgggcaaatttggccagga

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008842 lncRNA downstream 13186 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008152 lncRNA downstream 290770 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 335696 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 841008 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 841008 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008486 lncRNA upstream 269265 36956420 ~ 36964002 (-) True XLOC_004273
TCONS_00008168 lncRNA upstream 323006 37010161 ~ 37014671 (-) False XLOC_004274
TCONS_00008169 lncRNA upstream 323006 37010161 ~ 37014748 (-) False XLOC_004274
TCONS_00008170 lncRNA upstream 324281 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008844 lncRNA upstream 325918 37013073 ~ 37014727 (-) True XLOC_004274
TCONS_00008159 mRNA downstream 107328 36452294 ~ 36475124 (-) False XLOC_004268
TCONS_00008158 mRNA downstream 108014 36449698 ~ 36474438 (-) False XLOC_004268
TCONS_00008160 mRNA downstream 108146 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008156 mRNA downstream 131682 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA downstream 135797 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008164 mRNA upstream 1639 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA upstream 4646 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008166 mRNA upstream 106318 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008167 mRNA upstream 106395 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008172 mRNA upstream 418485 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008119 other downstream 1357313 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2115939 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2226790 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2616180 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3211085 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 612216 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1487916 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2260832 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2402720 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3495526 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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