RNA id: TCONS_00008842


Basic Information

Item Value
RNA id TCONS_00008842
length 248
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_004270
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36568924 ~ 36569266 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATGGACTTACCCTTGGTTGGCCTTGTTGTGCTGGTTGGCAGATTTGTTTTTGAAGAtgataatataaaaacaacaaaatatcacaagAGGAATAACTTTTGGGAGTGGATTTTACTGTTGAAGCTGATAAAAAGAAAATTTGTAAATGTTCAACAAGTGAGTGTGTGCGACGAACAACCACATAAGTCAAAATGAGATAACCACATGGCATCAATTGTGTGAACTTTATATACATAAACAGTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008152 lncRNA downstream 277242 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 322168 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 827480 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 827480 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008838 lncRNA downstream 827488 35720448 ~ 35741436 (-) False XLOC_004257
TCONS_00008843 lncRNA upstream 13186 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008162 lncRNA upstream 51451 36620717 ~ 36626002 (-) False XLOC_004271
TCONS_00008163 lncRNA upstream 51451 36620717 ~ 36626372 (-) False XLOC_004271
TCONS_00008485 lncRNA upstream 51726 36620992 ~ 36627322 (-) True XLOC_004271
TCONS_00008486 lncRNA upstream 387154 36956420 ~ 36964002 (-) True XLOC_004273
TCONS_00008159 mRNA downstream 93800 36452294 ~ 36475124 (-) False XLOC_004268
TCONS_00008158 mRNA downstream 94486 36449698 ~ 36474438 (-) False XLOC_004268
TCONS_00008160 mRNA downstream 94618 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008156 mRNA downstream 118154 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA downstream 122269 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008164 mRNA upstream 119528 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA upstream 122535 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008166 mRNA upstream 224207 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008167 mRNA upstream 224284 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008172 mRNA upstream 536374 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008119 other downstream 1343785 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2102411 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2213262 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2602652 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3197557 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 730105 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1605805 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2378721 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2520609 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3613415 40182681 ~ 40182796 (-) True XLOC_004319